Below is a list of my publications sorted by year. I plan to add the preprint pdf versions of most papers when I get around to it. My profiles on Google Scholar and Microsoft Academic also have publication lists with citation information.
2014
L. Maier-Hein, A. Groch, A. Bartoli, S. Bodenstedt, G. Boissonnat, P.-L. Chang, N. T. Clancy, D. S. Elson, S. Haase, E. Heim, J. Hornegger, P. Jannin, H. Kenngott, T. Kilgus, B. Muller-Stich, D. Oladokun, S. Rohl, T. R. dos Santos, H.-P. Schlemmer, A. Seitel, S. Speidel, M. Wagner, and D. Stoyanov: Comparative Validation of Single-shot Optical Techniques for Laparoscopic 3D Surface Reconstruction, IEEE Trans Medical Imaging, 2014 | publisher link
 
PL Chang, A. Handa, A. J. Davison, D. Stoyanov, P. "Eddie" Edwards. Robust real-time visual odometry for stereo endoscopy using dense quadrifocal tracking, Int Conf Information Processing in Computer Assisted Interventions, 2014 | (pdf) | publisher link
 
M. Allan, S. Ourselin, S. Thompson, D. J. Hawkes, J. Kelly, and D. Stoyanov: 2D-3D Pose Tracking of Rigid Instruments in MIS. Int Conf Information Processing in Computer Assisted Interventions, 2014 | (pdf) | publisher link
 
G. Jones, N. Clancy, S. Arridge, D. Elson, D. Stoyanov: Deblurring in an Integrated Pipeline for Multispectral Endoscopic Imaging. Int Conf Information Processing in Computer Assisted Interventions, 2014 | (pdf) | publisher link
 
M. Kochan, P. Daga, N. Burgos, M. White, M. Cardoso, L. Mancini, G. Winston, A. McEvoy, J. Thornton, T. Yousry, J. Duncan, D. Stoyanov, S. Ourselin: Simulated Field Maps for Susceptibility Artefact Correction in Interventional MRI. Int Conf Information Processing in Computer Assisted Interventions, 2014 | (pdf) | publisher link
 
J. Totz, S. Thompson, D. Stoyanov, K. Gurusamy, B. Davidson, D. Hawkes, M. Clarkson: Fast Semi-Dense Surface Reconstruction from Stereoscopic Video in Laparoscopic Surgery. Int Conf Information Processing in Computer Assisted Interventions, 2014 | (pdf) | publisher link
 
N. Clancy, S. Arya, R. Corbett, M. Singh, D. Stoyanov, J. Crane, N. Duncan, M. Ebner, Colin Caro, G. Hanna, D Elson: Optical Measurement of Anastomotic Oxygenation Dynamics, Biomedical Optics (BIOMED), 2014 | (pdf) | publisher link
 
N. Clancy, S. Sasoc, D. Stoyanov, V. Sauvagea, D. J. Corlesse, M. Boyd, D. E. Noakes, M.-Y. Thum, S. Ghaem-Maghami, J. R. Smith, D. S. Elson: Multispectral Imaging of Organ Viability during Uterine Transplantation Surgery, Proc SPIE (BIOS), 2014 | (pdf) | publisher link
 
2013
P.-L. Chang, D. Stoyanov, A. J. Davison, P. E. Edwards. Real-Time Dense Stereo Reconstruction Using Convex Optimisation with a Cost-Volume for Image-Guided Robotic Surgery, MICCAI, 42-49, 2013 | (pdf) | publisher link
 
L Maier-Hein, P Mountney, A Bartoli, H Elhawary, D Elson, A Groch, A Kolb, M Rodrigues, J Sorger, S Speidel, D Stoyanov. Optical Techniques for 3D Surface Reconstruction in Computer-assisted Laparoscopic Surgery, Medical Image Analysis, 17(8):974–996, 2013 | (pdf) | publisher link
 
A.E. Rolls, C.V. Riga, C.D. Bicknell, D.V. Stoyanov, C.V. Shah, I. Van Herzeele, M. Hamady, N.J. Cheshire, A Pilot Study of Video-motion Analysis in Endovascular Surgery: Development of Real-time Discriminatory Skill Metrics, European Journal of Vascular and Endovascular Surgery, 45(5):509-15, 2013 | (pdf) | publisher link
 
Allan, M., Ourselin, S., Thompson, S., Hawkes, D., Kelly, J. and Stoyanov, D. Towards Detection and Localization of Instruments in Minimally Invasive Surgery. IEEE Transactions on Biomedical Engineering, 60(4):1050-8, 2013 | (pdf) | publisher link
 
2012
  

Clancy, N. T.,Stoyanov, D., James, D. R. C., Di Marco, A., Sauvage, V., Clark, J., Yang, G.-Z., and Elson, D. S. Multispectral image alignment using a three channel endoscope in vivo during minimally invasive surgery. Biomedical Optics Express, 3(10), 2012 | publisher link

 
A Rolls, C Riga, D stoyanov, I Van Herzeele, M Hamady, G-Z Yang, N Cheshire, C Bicknell: Motion analysis of catheter based endovascular tasks to develop reproducible, real-time skill metrics with discriminatory potential. European Socienty for Vascular Surgery, 2012
 
D. Stoyanov: Stereoscopic Scene Flow for Robotic Assisted Minimally Invasive Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI12), 479-486, 2012 | (pdf) | publisher link
 
D. Stoyanov, P. Pratt, E. Edwards, G.-Z. Yang, A. Arora, A. Darzi, N. Tolley:  Quantitative Tissue Measurements in Transoral Robotic Surgery. Hamlyn Symposium on Medical Robotics, 2012 | (pdf)

D. Stoyanov: Surgical Vision, Annals of Biomedical Engineering, 40(2): 332-34, 2012 | (pdf) | publisher link
 
M. Viscentini Scarzanela, D. Stoyanov, G.-Z. Yang: Metric Depth Recovery from Monocular Images Using Shape-from-Shading and Specularities, IEEE Int Conference on Image Processing (ICIP), 2012
 

D. Stoyanov, A. Rayshubskiy, E. Hillman, Robust Registration of Multispectra Images of the Cortical Surface in Neurosurgery, IEEE Int Symposium on Biomedical Imaging (ISBI), 1643-1646, 2012 | (pdf) | publisher link

 
A Rolls, C V Riga, C V Shah, D Stoyanov, I Van Herzeele, G Z Yang, M Hamady, C D Bicknell, N J W Cheshire: Video motion analysis in catheter-based endovascular intervention; a novel objective method for assessment of endovascular skill? Int Soc Vascular Surgery, Miami, 2012
 

N.T. Clancy, D. Stoyanov, G.Z. Yang, D.S. Elson: Stroboscopic illumination scheme for seamless 3D endoscopy, Proc. SPIE 8214, 82140M (2012) publisher link

 
 2011
N. T. Clancy, D. Stoyanov, L. Maier-Hein, A. Groch, G.-Z. Yang and D. S. Elson: Spectrally encoded fiber-based structured lighting probe for intraoperative 3D imaging. Biomed Opt Express. 11:3119-3128, 2011.

J. Totz, P. Mountney, D. Stoyanov and G.-Z. Yang: Dense Surface Reconstruction for Enhanced Navigation in Minimally Invasive Surgery, Medical Image Computing and Computer Assisted Interventions (MICCAI11), , 2011. (poster presentation)
 

N.T. Clancy, D. Stoyanov, G.Z. Yang, D.S. Elson: An endoscopic structured lighting probe using spectral encoding, SPIE/OSA European Conference on Biomedical Optics, 2011. (oral presentation)

 
D. Stoyanov and G.Z. Yang: Real-Time 3D Reconstruction of Tissue Surfaces for Robotic MIS, Hamlyn Symposium on Medical Robotics, 2011. (oral presentation)
 

N.T. Clancy, D. Stoyanov, G.Z. Yang, D. S. Elson: Design of a miniature multispectral structured lighting probe for endoscopic use, Hamlyn Symposium on Medical Robotics, 2011. (poster presentation)

 
C.V. Shah, C.V. Riga, D. Stoyanov, G.-Z. Yang, N.J.W. Cheshire and C.D. Bicknell: Video motion analysis for approaching objective assessment of catheter-based endovascular interventions, Hamlyn Symposium on Medical Robotics, 2011. (poster presentation)
 
C.V. Shah, C.V. Riga, D. Stoyanov, G.-Z. Yang, N.J.W. Cheshire and C.D. Bicknell: Video motion analysis for objective assessment in catheter-based endovascular intervention, BJS Prize Session at the Annual Meeting of The Vascular Society, 2011. (oral presentation)
 
A. Dore, D. Stoyanov, G.-Z. Yang: Catheter tip localization using IVUS sensor, SCATh Workshop on Joint Workshop on New Technologies for Computer/Robot Assisted Surgery, 2011
 
W. Latt, A. Dore, D. Stoyanov and G.Z. Yang: Evaluation of force sensing accuracy of TactiCath , SCATh Workshop on Joint Workshop on New Technologies for Computer/Robot Assisted Surgery, 2011.

 A Rolls, CV Riga, CV Shah, D Stoyanov, I.Van Herzeele, GZ Yang, M Hamady, CD Bicknell, NJW Cheshire: Video motion analysis for objective assessment in catheter-based endovascular intervention. MEET Congress, Rome, (1 Dec 2011)
 
Clancy NT; Stoyanov D; Yang GZ; Elson DS. An endoscopic structured lighting probe using spectral encoding. Novel Biophotonic Techniques and Applications. (9 Jun 2011).
 

Clancy NT; Stoyanov D; James DRC; Sauvage V; Yang GZ; Elson DS. Three-dimensional imaging techniques and applications for minimally invasive surgery. ECI Advances in Optics for Biotechnology, Medicine and Surgery XII. (5 Jun 2011)

2010
D. Chen, D. Cohen, D. Stoyanov, A. Anstee, E.K. Mayer, G.Z. Yang, A. Darzi, P. Edwards: Stereo Video Reconstruction for Registration in Augmented Reality Robotic Radical Prostatectomy, Hamlyn Symposium on Medical Robotics, 2010. (poster presentation)
 
N.T. Clancy, D. Stoyanov, V. Sauvage, D. James, G.Z. Yang, D.S. Elson: Three Dimensional Tracking and Image Registration Using a da Vinci Triple Endoscope System, Hamlyn Symposium on Medical Robotics, 2010. (poster presentation)
 
N. T. Clancy, D. Stoyanov, V. Sauvage, D.James, G.-Z. Yang, D. S. Elson: A Triple Endoscope System for Alignment of Multispectral Images of Moving Tissue. Biomedical Optics (BIOMED), 2010. (oral presenation)
 
P. Mountney, D. Stoyanov and G.-Z. Yang: Three-Dimensional Tissue Deformation Recovery and Tracking. IEEE Signal Processsing Magazine, , 2010
 
Danail Stoyanov, Marco Visentini Scarzanella, Philip Pratt and Guang-Zhong Yang: Real-time Stereo Reconstruction in Robotic Assisted Minimally Invasive Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI10), 275-282, 2010. | (pdf) | code | publisher link
 

M.Visentini Scarzanella, R. Merrifield, D. Stoyanov and G.-Z. Yang: : i-BRUSH: Tracking of Irregular Graphical Structures for Tissue Deformation Recovery in Minimally Invasive Surgery.Medical Image Computing and Computer Assisted Interventions (MICCAI10), 261-268, 2010 (poster presentation ~ 32% acceptance)

 
P. Pratt, M. Visentini Scarzanella, D. Stoyanov and G.-Z. Yang: Dynamic Guidance for Robotic Surgery using Image-Constrained Biomechanical Models. Medical Image Computing and Computer Assisted Interventions (MICCAI10), 77-85, 2010 (oral presentation ~ 6% acceptance)

2009
D. Stoyanov and G.-Z. Yang: Soft Tissue Deformation Tracking for Robotic Assisted Minimally Invasive Surgery. International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC09), vol. 1, 2009. (oral presentation)
 
D. Stoyanov, D. Elson and G.-Z. Yang: Illumination Position Estimation for 3D Soft-Tissue Reconstruction in Robotic Minimally Invasive Surgery. IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS09), pp. 2628-2633, 2009. (oral presentation)
 
M. V. Scarzanella, G. P. Mylonas, D. Stoyanov, G.-Z. Yang: i-BRUSH: A Gaze-Contingent Virtual Paintbrush for Dense 3D Reconstruction in Robotic Assisted Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI09), vol. 1, pp. 353-360, 2009. (poster presentation)
 
2008
D. Stoyanov, G. P. Mylonas, M. Lerotic and G.-Z. Yang: Intra-operative Visualizations: Perceptual Fidelity and Human Factors. IEEE/OSA Journal of Display Technologies, vol. 4, pp. 491-501, 2008.
 
D. Stoyanov, G. P. Mylonas and G.-Z. Yang: Gaze-Contingent Control for Robotic Assisted Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI08), vol. 2, pp. 347-355, 2008. (oral presentation)
 
B. Lo, M. V. Scarzanella, D. Stoyanov, G.-Z. Yang: Belief Propagation for Depth Cue Fusion in Minimally Invasive Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI08), vol. 2, pp. 104-112, 2008. (poster presentation)
 
B. Lo, A. J. Chung, D. Stoyanov, G. Mylonas and G.-Z. Yang: Real-time Intra-operative 3D Tissue Deformation Recovery. International Symposium on Biomedical Imaging (ISBI08), pp. 1387-1390, 2008

 
2007
D. Stoyanov and G.-Z. Yang: Stabilization of Image Motion for Robotic Assisted Beating Heart Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI07), vol. 1, pp. 417-424, 2007 (poster presentation)
 
G. P. Mylonas, D. Stoyanov, A. Darzi and G.-Z. Yang: Assessment of Perceptual Quality for Gaze-Contingent Motion Stabilization in Robotic Assisted Minimally Invasive Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI07), vol. 2, pp. 660-667, 2007. (oral presentation)
 
P. Mountney, B. Lo, S. Thiemjarus, D. Stoyanov and G.-Z. Yang: A Probabilistic Framework for Tracking Deformable Soft Tissue in Minimally Invasive Surgery, Medical Image Computing and Computer Assisted Interventions (MICCAI07), vol. 2, pp. 34-41, 2007 (poster presentation)

 

L. Atallah, M. ElHelw, J. Pansiot, D. Stoyanov, L. Wang, B. Lo, and G.-Z. Yang. Behaviour Profiling with Ambient and Wearable Sensing. International Workshop on Wearable and Implantable Body Sensor Networks 2007 (BSN07), pp. 133-138, 2007 (oral presentation)

 

J. Pansiot, D. Stoyanov, D. McIlwraith, B. Lo, and G.-Z. Yang: Ambient and Wearable Sensor Fusion for Activity Recognition in Healthcare Monitoring Systems. International Workshop on Wearable and Implantable Body Sensor Networks 2007 (BSN07), pp. 208-212, 2007 (oral presentation)

 
2006
P. Mountney, D. Stoyanov, A. Davison and G.-Z. Yang: Simultaneous Stereoscope Localization and Soft-Tissue Mapping for Minimal Invasive Surgery, Medical Image Computing and Computer Assisted Interventions (MICCAI06), vol. 347-354, pp. 139-146, 2006 (poster presentation)
 
J. Pansiot, D. Stoyanov, B. Lo and G.-Z. Yang: Towards Image-Based Modeling for Ambient Sensing, International Workshop on Wearable and Implantable Body Sensor Networks (BSN06), pp. 195-198, 2006 (poster presentation)
 
2005
D. Stoyanov, A. Darzi, G.-Z. Yang: A Practical Approach Towards Accurate Dense 3D Depth Recovery for Robotic Laparoscopic Surgery. Computer Aided Surgery, vol. 10, no. 4, pp. 199-208, 2005.
 
D. Stoyanov, G. Mylonas, F. Deligianni, A. Darzi, G.-Z. Yang: Soft-tissue Motion Tracking and Structure Estimation for Robotic Assisted MIS Procedures. Medical Image Computing and Computer Assisted Interventions (MICCAI05), vol. 2, pp. 139-146, 2005 (poster presentation)
 
D. Stoyanov, A. Darzi, G.-Z. Yang: Laparoscope Self-calibration for Robotic Assisted Minimally Invasive Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI05), vol. 2, pp. 114-121, 2005 (poster presentation)

 

G. Mylonas, D. Stoyanov, F. Deligianni, A. Darzi, G.-Z. Yang: Gaze Contingent Soft Tissue Deformation Tracking for Minimally Invasive Robotic Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI05), vol. 1, pp. 843-850, 2005 (oral presentation)

 

D. Stoyanov, G.-Z. Yang: Removing Specular Reflection Components for Robotic Assisted Laparoscopic Surgery. IEEE International Conference on Image Processing (ICIP05), vol. 3, pp. 632-635, 2005.

 
2004
D. Stoyanov, A. Darzi, G.-Z. Yang: Dense 3D Depth Recovery for Soft Tissue Deformation During Robotically Assisted Laparoscopic Surgery. Medical Image Computing and Computer Assisted Interventions (MICCAI04), vol. 2, pp. 48-55, 2004. (oral presentation) Best Paper Prize
 
2003
D. Stoyanov, M. A. ElHelw, B. P. L. Lo, A. James Chung, F. Bello, G.-Z. Yang: Current Issues of Photorealistic Rendering for Virtual and Augmented Reality in Minimally Invasive Surgery. IEEE Information Visualization (IV03), pp. 350-359, 2003. (oral presentation)