Problems and Solutions

• linux and USB,
• PHP 5.3 problems,
• Ocaml problems,
• CIL problems,
• installing CUDA on gentoo,
• CUDA 5.0 and upgrading SDK
• mummergpu
• GPU Blast problems
• blastn problems
• BWA problems
• How to read unix environment variables
• Abort (timeout) after N seconds?
  In Linux with tsch, eg for 10 seconds:

  limit cputime 10
  

• UNIX: Remove a file with a name starting with - character. Eg filename is -v

  rm ./-v
  

  See rm --help.

  NB a file called -v in a directory can mess up grep when using wild cards on grep's command line.

• Emerald LSF
• clean up and look up DOI
• Convert internet address ipv4 to country
• Unix GraphicsMagick-1.3.17 and AVI
• OpenCV 2.4.3 failed to read AVI files under unix