|
1
|
EM_HTG:AF241217
|
Homo sapiens unknown sequence. - Cross-references and related information in:
|
249 |
1245 |
100.0 |
100.0 |
6.2E-20 |
| >>EM_HTG:AF241217 AF241217.1 Homo sapiens unknown sequence. (249 nt)
initn: 1245 init1: 1245 opt: 1245 Z-score: 546.6 bits: 108.6 E(132426985): 6.2e-20
banded Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 249 nt overlap (1-249:1-249)
10 20 30 40 50 60
AF2412 TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGAGATGTTTCAATTCACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGAGATGTTTCAATTCACAG
10 20 30 40 50 60
70 80 90 100 110 120
AF2412 CGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATTAGGCATTACCCTAATTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG CGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATTAGGCATTACCCTAATTA
70 80 90 100 110 120
130 140 150 160 170 180
AF2412 GGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAGCTAAACGAAGCTTATCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG GGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAGCTAAACGAAGCTTATCG
130 140 150 160 170 180
190 200 210 220 230 240
AF2412 CAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCCACCAAAAACTCTTGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG CAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCCACCAAAAACTCTTGCTT
190 200 210 220 230 240
AF2412 ATCCCGCGT
:::::::::
EM_HTG ATCCCGCGT
|
|
2
|
EM_PRO:FJ876260
|
Mycoplasma orale strain MT-4 16S ribosomal RNA
gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2231 |
1127 |
99.1 |
99.1 |
1.9E-17 |
| >>EM_PRO:FJ876260 FJ876260.1 Mycoplasma orale strain MT-4 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (2231 nt)
rev-comp initn: 1110 init1: 1110 opt: 1127 Z-score: 484.9 bits: 100.4 E(132426985): 1.9e-17
banded Smith-Waterman score: 1127; 99.1% identity (99.1% similar) in 229 nt overlap (242-14:1731-1959)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
1710 1720 1730 1740 1750 1760
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
1770 1780 1790 1800 1810 1820
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
1830 1840 1850 1860 1870 1880
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
1890 1900 1910 1920 1930 1940
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
1950 1960 1970 1980 1990 2000
|
|
3
|
EM_PRO:AF294995
|
Mycoplasma orale 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
738 |
1127 |
99.1 |
99.1 |
2.4E-17 |
| >>EM_PRO:AF294995 AF294995.1 Mycoplasma orale 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (738 nt)
rev-comp initn: 1110 init1: 1110 opt: 1127 Z-score: 491.5 bits: 100.0 E(132426985): 2.4e-17
banded Smith-Waterman score: 1127; 99.1% identity (99.1% similar) in 229 nt overlap (242-14:248-476)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
220 230 240 250 260 270
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
280 290 300 310 320 330
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
340 350 360 370 380 390
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
400 410 420 430 440 450
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
460 470 480 490 500 510
|
|
4
|
EM_PRO:AY737010
|
Mycoplasma orale 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
882 |
1118 |
98.7 |
98.7 |
3.8E-17 |
| >>EM_PRO:AY737010 AY737010.1 Mycoplasma orale 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (882 nt)
rev-comp initn: 1101 init1: 1101 opt: 1118 Z-score: 486.7 bits: 99.4 E(132426985): 3.8e-17
banded Smith-Waterman score: 1118; 98.7% identity (98.7% similar) in 229 nt overlap (242-14:385-613)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
360 370 380 390 400 410
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
420 430 440 450 460 470
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
480 490 500 510 520 530
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGACGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
540 550 560 570 580 590
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGGTTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
600 610 620 630 640 650
|
|
5
|
EM_PRO:AY762640
|
Mycoplasma indiense 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
870 |
1100 |
97.8 |
97.8 |
9.8E-17 |
| >>EM_PRO:AY762640 AY762640.1 Mycoplasma indiense 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (870 nt)
rev-comp initn: 1083 init1: 1083 opt: 1100 Z-score: 479.4 bits: 98.0 E(132426985): 9.8e-17
banded Smith-Waterman score: 1100; 97.8% identity (97.8% similar) in 229 nt overlap (242-14:372-600)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO AAATACTTATACGTAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
350 360 370 380 390 400
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATAAG
410 420 430 440 450 460
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
470 480 490 500 510 520
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAACAGC
530 540 550 560 570 580
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
::::: :::::: ::: ::
EM_PRO AGGAAAAGAAAATAAAGAATGATTCCCTGAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
590 600 610 620 630 640
|
|
6
|
EM_PRO:CP001047
|
Mycoplasma arthritidis 158L3-1, complete genome. - Cross-references and related information in:
|
820453 |
932 |
91.5 |
91.5 |
2.1E-13 |
| >>EM_PRO:CP001047 CP001047.1 Mycoplasma arthritidis 158L3-1,
complete genome. (820453 nt)
rev-comp initn: 863 init1: 565 opt: 932 Z-score: 379.5 bits: 87.0 E(132426985): 2.1e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:193163-193384)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
193140 193150 193160 193170 193180 193190
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
193200 193210 193220 193230 193240 193250
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
:::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
193260 193270 193280 193290 193300 193310
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
193320 193330 193340 193350 193360 193370
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
193380 193390 193400 193410 193420 193430
|
|
7
|
EM_PRO:FP236530
|
Mycoplasma hominis strain PG21, chromosome, complete genome. - Cross-references and related information in:
|
665445 |
926 |
90.0 |
90.0 |
2.8E-13 |
| >>EM_PRO:FP236530 FP236530.1 Mycoplasma hominis strain PG21,
chromosome, complete genome. (665445 nt)
initn: 806 init1: 553 opt: 926 Z-score: 377.0 bits: 86.5 E(132426985): 2.8e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (14-242:491878-492105)
10 20 30 40
AF2412 TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGA
:: ::: :::::::::::::::::::::::
EM_PRO CCCGTTCGCTCGCCACTACTTAGGGAATCATTCTTTATTTTCTCTTCCTGCTGCTACTGA
491850 491860 491870 491880 491890 491900
50 60 70 80 90 100
AF2412 GATGTTTCAATTCACAGCGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATT
::::::::::::::::::::::::: ::::::: ::::: ::::: ::: ::::: ::::
EM_PRO GATGTTTCAATTCACAGCGTGTCTCTTCATTCGACTATGAATTCATCGA-TATGATAATT
491910 491920 491930 491940 491950 491960
110 120 130 140 150 160
AF2412 AGGCATTACCCTAATTAGGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAG
: :::: : ::::::::::::::::::::::::: ::: ::: ::: ::::::::
EM_PRO GAGGATTAGCTCAATTAGGTTTCCCCATTCGGAAATCCCCGGATAACAGCTTATTTCCAG
491970 491980 491990 492000 492010 492020
170 180 190 200 210 220
AF2412 CTAAACGAAGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
:::: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CTAACCGAGGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
492030 492040 492050 492060 492070 492080
230 240
AF2412 ACCAAAAACTCTTGCTTATCCCGCGT
::::::::::::::::: :
EM_PRO ACCAAAAACTCTTGCTTGTTTAATAGTTTTGTTAATTGTATGACCTATTGTTTGTCTTAT
492090 492100 492110 492120 492130 492140
|
|
8
|
EM_PRO:FP236530
|
Mycoplasma hominis strain PG21, chromosome, complete genome. - Cross-references and related information in:
|
665445 |
926 |
90.0 |
90.0 |
2.8E-13 |
| >>EM_PRO:FP236530 FP236530.1 Mycoplasma hominis strain PG21,
chromosome, complete genome. (665445 nt)
initn: 806 init1: 553 opt: 926 Z-score: 377.0 bits: 86.5 E(132426985): 2.8e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (14-242:329859-330086)
10 20 30 40
AF2412 TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGA
:: ::: :::::::::::::::::::::::
EM_PRO CCCGTTCGCTCGCCACTACTTAGGGAATCATTCTTTATTTTCTCTTCCTGCTGCTACTGA
329830 329840 329850 329860 329870 329880
50 60 70 80 90 100
AF2412 GATGTTTCAATTCACAGCGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATT
::::::::::::::::::::::::: ::::::: ::::: ::::: ::: ::::: ::::
EM_PRO GATGTTTCAATTCACAGCGTGTCTCTTCATTCGACTATGAATTCATCGA-TATGATAATT
329890 329900 329910 329920 329930 329940
110 120 130 140 150 160
AF2412 AGGCATTACCCTAATTAGGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAG
: :::: : ::::::::::::::::::::::::: ::: ::: ::: ::::::::
EM_PRO GAGGATTAGCTCAATTAGGTTTCCCCATTCGGAAATCCCCGGATAACAGCTTATTTCCAG
329950 329960 329970 329980 329990 330000
170 180 190 200 210 220
AF2412 CTAAACGAAGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
:::: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CTAACCGAGGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
330010 330020 330030 330040 330050 330060
230 240
AF2412 ACCAAAAACTCTTGCTTATCCCGCGT
::::::::::::::::: :
EM_PRO ACCAAAAACTCTTGCTTGTTTAATAGTTTTGTTAATTGTATGACCTATTGTTTGTCTTTA
330070 330080 330090 330100 330110 330120
|
|
9
|
EM_PRO:EU859975
|
Mycoplasma salivarium strain MP1166 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2219 |
944 |
90.8 |
90.8 |
3.0E-13 |
| >>EM_PRO:EU859975 EU859975.1 Mycoplasma salivarium strain
MP1166 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2219 nt)
rev-comp initn: 881 init1: 581 opt: 944 Z-score: 409.5 bits: 86.4 E(132426985): 3e-13
banded Smith-Waterman score: 944; 90.8% identity (90.8% similar) in 229 nt overlap (242-14:1716-1943)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATTATATTTATACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
1690 1700 1710 1720 1730 1740
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::: ::::::: ::::::::::: :::::::::::::: :::::::::::::::: ::
EM_PRO GTCTGAAAGTCGAAGAAGGACGTGACTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAG
1750 1760 1770 1780 1790 1800
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CATTTAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
1810 1820 1830 1840 1850 1860
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
: ::::::::::::: : :::: ::::::::::::::::::::::::::::::::::::
EM_PRO CCAGTGAATCCATAGCTGGATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
1870 1880 1890 1900 1910 1920
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTTCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
1930 1940 1950 1960 1970 1980
|
|
10
|
EM_PRO:AF443617
|
Mycoplasma hominis thiamine biosynthesis
protein (thiI) gene, partial cds; hypothetical protein, 50S ribosomal
protein L33 (rpmG), hypothetical protein, and transcription
antitermination protein (nusG) genes, complete cds; rrnB operon,
complete sequence; and endo-1,4-beta-glucanase and hypothetical protein
genes, complete cds. - Cross-references and related information in:
|
10508 |
926 |
90.0 |
90.0 |
5.3E-13 |
| >>EM_PRO:AF443617 AF443617.3 Mycoplasma hominis thiamine
biosynthesis protein (thiI) gene, partial cds; hypothetical
protein, 50S ribosomal protein L33 (rpmG), hypothetical
protein, and transcription antitermination protein (nusG)
genes, complete cds; rrnB operon, complete sequence; and
endo-1,4-beta-glucanase and hypothetical protein genes,
complete cds. (10508 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 392.9 bits: 85.6 E(132426985): 5.3e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:5799-6026)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
5770 5780 5790 5800 5810 5820
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
5830 5840 5850 5860 5870 5880
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
5890 5900 5910 5920 5930 5940
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
5950 5960 5970 5980 5990 6000
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
6010 6020 6030 6040 6050 6060
|
|
11
|
EM_PRO:AF443616
|
Mycoplasma hominis DNA-dependent RNA polymerase
alpha chain gene, partial cds; 50S ribosomal protein L17 and 50S
ribosomal protein L32 genes, complete cds; rrnA operon, complete
sequence; 50S ribosomal protein L10 and 50S ribosomal protein L7/L12
genes, complete cds; and DNA-dependent RNA polymerase beta chain (rpoB)
gene, partial cds. - Cross-references and related information in:
|
10244 |
926 |
90.0 |
90.0 |
5.4E-13 |
| >>EM_PRO:AF443616 AF443616.3 Mycoplasma hominis DNA-dependent
RNA polymerase alpha chain gene, partial cds; 50S ribosomal
protein L17 and 50S ribosomal protein L32 genes, complete
cds; rrnA operon, complete sequence; 50S ribosomal protein
L10 and 50S ribosomal protein L7/L12 genes, complete cds;
and DNA-dependent RNA polymerase beta chain (rpoB) gene,
partial cds. (10244 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 393.0 bits: 85.6 E(132426985): 5.4e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:3116-3343)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
3090 3100 3110 3120 3130 3140
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
3150 3160 3170 3180 3190 3200
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
3210 3220 3230 3240 3250 3260
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
3270 3280 3290 3300 3310 3320
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
3330 3340 3350 3360 3370 3380
|
|
12
|
EM_PRO:EU859980
|
Mycoplasma arthritidis strain 91021 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2222 |
932 |
91.5 |
91.5 |
5.6E-13 |
| >>EM_PRO:EU859980 EU859980.1 Mycoplasma arthritidis strain
91021 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2222 nt)
rev-comp initn: 800 init1: 565 opt: 932 Z-score: 404.6 bits: 85.5 E(132426985): 5.6e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:1726-1947)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
1700 1710 1720 1730 1740 1750
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
1760 1770 1780 1790 1800 1810
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
:::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
1820 1830 1840 1850 1860 1870
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
1880 1890 1900 1910 1920 1930
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
1940 1950 1960 1970 1980 1990
|
|
13
|
EM_PRO:AY786574
|
Mycoplasma salivarium 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
862 |
935 |
90.4 |
90.4 |
6.0E-13 |
| >>EM_PRO:AY786574 AY786574.1 Mycoplasma salivarium 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (862 nt)
rev-comp initn: 872 init1: 572 opt: 935 Z-score: 411.5 bits: 85.4 E(132426985): 6e-13
banded Smith-Waterman score: 935; 90.4% identity (90.4% similar) in 229 nt overlap (242-14:364-591)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATTATATTTATACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
340 350 360 370 380 390
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
::::: ::::::: ::::::::::: :::::::::::::: :::::::: ::::::: ::
EM_PRO GTCTGAAAGTCGAAGAAGGACGTGACTACCTGCGATAAGCCTCGTTTAGTTGGAAATAAG
400 410 420 430 440 450
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
::::::::::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CATTTAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
460 470 480 490 500 510
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
: ::::::::::::: : :::: ::::::::::::::::::::::::::::::::::::
EM_PRO CCAGTGAATCCATAGCTGGATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
520 530 540 550 560 570
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
580 590 600 610 620 630
|
|
14
|
EM_PRO:AY973560
|
Mycoplasma arthritidis strain ATCC 19611 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
864 |
932 |
91.5 |
91.5 |
7.0E-13 |
| >>EM_PRO:AY973560 AY973560.1 Mycoplasma arthritidis strain
ATCC 19611 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (864 nt)
rev-comp initn: 800 init1: 565 opt: 932 Z-score: 410.2 bits: 85.2 E(132426985): 7e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:376-597)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
350 360 370 380 390 400
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
410 420 430 440 450 460
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
:::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
470 480 490 500 510 520
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
530 540 550 560 570 580
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
590 600 610 620 630 640
|
|
15
|
EM_PRO:AY055378
|
Mycoplasma hominis strain PG21 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
1630 |
926 |
90.0 |
90.0 |
8.3E-13 |
| >>EM_PRO:AY055378 AY055378.1 Mycoplasma hominis strain PG21
23S ribosomal RNA gene, partial sequence. (1630 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 404.0 bits: 85.0 E(132426985): 8.3e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:7-234)
250 240 230 220 210 200
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
: :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO TATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
10 20 30 40 50
190 180 170 160 150 140
AF241- GATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTAGACGGAGATTTCCGAAT
::::::::::::::::: ::: :::::::::::: ::: ::: ::: :::::::::::
EM_PRO GATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTATCCGGGGATTTCCGAAT
60 70 80 90 100 110
130 120 110 100 90 80
AF241- GGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTGAATCCATAGCCGAATGA
:::::::::::::: : :::: : :::: :::: :::: ::::: ::::: :::::::
EM_PRO GGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATGAATTCATAGTCGAATGA
120 130 140 150 160 170
70 60 50 40 30 20
AF241- TGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAAAAAAAAAAAAA
:::::::::::::::::::::::::::::::::::::::::::::::: ::: ::
EM_PRO AGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAATAAAGAATGAT
180 190 200 210 220 230
10
AF241- AAAAAAAAA
EM_PRO TCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAACACATGTTGTTGGGGTTG
240 250 260 270 280 290
|
|
16
|
EM_PRO:AY738737
|
Mycoplasma hominis strain ATCC 27545 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
823 |
926 |
90.0 |
90.0 |
9.7E-13 |
| >>EM_PRO:AY738737 AY738737.1 Mycoplasma hominis strain ATCC
27545 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (823 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 408.0 bits: 84.7 E(132426985): 9.7e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:331-558)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
310 320 330 340 350 360
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
370 380 390 400 410 420
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
430 440 450 460 470
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
480 490 500 510 520 530
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
540 550 560 570 580 590
|
|
17
|
EM_PRO:AF294989
|
Mycoplasma hominis isolate 1 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene,
partial sequence. - Cross-references and related information in:
|
723 |
926 |
90.0 |
90.0 |
1.0E-12 |
| >>EM_PRO:AF294989 AF294989.1 Mycoplasma hominis isolate 1
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (723 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 408.8 bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:194-421)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
170 180 190 200 210 220
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
230 240 250 260 270 280
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
290 300 310 320 330 340
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
350 360 370 380 390 400
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
410 420 430 440 450 460
|
|
18
|
EM_PRO:AF294990
|
Mycoplasma hominis isolate 2 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene,
partial sequence. - Cross-references and related information in:
|
722 |
926 |
90.0 |
90.0 |
1.0E-12 |
| >>EM_PRO:AF294990 AF294990.1 Mycoplasma hominis isolate 2
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (722 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 408.8 bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:193-420)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
170 180 190 200 210 220
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
230 240 250 260 270 280
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
290 300 310 320 330 340
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
350 360 370 380 390 400
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
410 420 430 440 450 460
|
|
19
|
EM_PRO:AF294991
|
Mycoplasma hominis isolate 3 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene,
partial sequence. - Cross-references and related information in:
|
721 |
926 |
90.0 |
90.0 |
1.0E-12 |
| >>EM_PRO:AF294991 AF294991.1 Mycoplasma hominis isolate 3
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (721 nt)
rev-comp initn: 806 init1: 553 opt: 926 Z-score: 408.8 bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:192-419)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
: ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
170 180 190 200 210 220
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
230 240 250 260 270 280
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
: ::: ::: ::::::::::::::::::::::::: : :::: : :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
290 300 310 320 330 340
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
350 360 370 380 390 400
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::::::::: ::: ::
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
410 420 430 440 450 460
|
|
20
|
EM_PRO:AY973563
|
Mycoplasma hyosynoviae strain ATCC 25591 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
851 |
919 |
90.6 |
90.6 |
1.4E-12 |
| >>EM_PRO:AY973563 AY973563.1 Mycoplasma hyosynoviae strain
ATCC 25591 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (851 nt)
rev-comp initn: 894 init1: 603 opt: 919 Z-score: 404.9 bits: 84.2 E(132426985): 1.4e-12
banded Smith-Waterman score: 919; 90.6% identity (90.6% similar) in 224 nt overlap (237-14:359-581)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTG
::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATATTAACTATTAAATGTACAAGAGTTTTTGGTGGATGCCTTGGGTCTG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- GAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTT
::::::::::::::::::::::::::::::::::: :::::::: :::: :: :::: :
EM_PRO GAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGTTGGATATAAGCAATG
390 400 410 420 430 440
140 130 120 110 100 90
AF241- AGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGT
:::::: ::::::::::::::::::::::::: : :::: : ::::::::: ::: ::
EM_PRO AGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTGTCAT-ATCAGT
450 460 470 480 490 500
80 70 60 50 40 30
AF241- GAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAA
::::::::::: :::::: ::::::::::::::::::::::::::::::::::::::::
EM_PRO GAATCCATAGCTGAATGACAAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAA
510 520 530 540 550 560
20 10
AF241- GAGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AAGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAA
570 580 590 600 610 620
|
|
21
|
EM_PRO:DQ847421
|
Mycoplasma equirhinis strain M432-72 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
824 |
914 |
90.6 |
90.6 |
1.8E-12 |
| >>EM_PRO:DQ847421 DQ847421.1 Mycoplasma equirhinis strain
M432-72 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (824 nt)
rev-comp initn: 842 init1: 589 opt: 914 Z-score: 403.1 bits: 83.8 E(132426985): 1.8e-12
banded Smith-Waterman score: 914; 90.6% identity (90.6% similar) in 223 nt overlap (236-14:333-554)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AGGTCATACAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : ::::::::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTGTCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|
|
22
|
EM_PRO:AY800342
|
Mycoplasma faucium strain ATCC 25293 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
855 |
911 |
88.6 |
88.6 |
2.1E-12 |
| >>EM_PRO:AY800342 AY800342.1 Mycoplasma faucium strain ATCC
25293 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (855 nt)
rev-comp initn: 894 init1: 894 opt: 911 Z-score: 401.6 bits: 83.6 E(132426985): 2.1e-12
banded Smith-Waterman score: 911; 88.6% identity (88.6% similar) in 229 nt overlap (242-14:360-588)
250 240 230 220
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
::::::::::::::::::::::::::::::
EM_PRO AACAATAGGTCATACATATTTAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
330 340 350 360 370 380
210 200 190 180 170 160
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
:::: :::::::: :::::::::::::::::::::::::: :::::::: ::::::: :
EM_PRO GTCTAGAAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGTTGGAAATAAA
390 400 410 420 430 440
150 140 130 120 110 100
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
:::: :::::: ::::::::::::::::::::::::: : :::: : :::: :::::
EM_PRO CATTGAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCATAG
450 460 470 480 490 500
90 80 70 60 50 40
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
:: :::::: :::::: :::::: :::::::: :::::::::::::::::::::: :: :
EM_PRO TCAGTGAATACATAGCTGAATGAAGAGACACGTTGTGAATTGAAACATCTCAGTAACAAC
510 520 530 540 550 560
30 20 10
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA
::::: :::::: ::: ::
EM_PRO AGGAAAAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
570 580 590 600 610 620
|
|
23
|
EM_PRO:HM179556
|
Mycoplasma arginini strain EF-Hungary 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2745 |
905 |
90.1 |
90.1 |
2.2E-12 |
| >>EM_PRO:HM179556 HM179556.1 Mycoplasma arginini strain
EF-Hungary 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (2745 nt)
rev-comp initn: 786 init1: 533 opt: 905 Z-score: 392.2 bits: 83.5 E(132426985): 2.2e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:1692-1913)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
1670 1680 1690 1700 1710 1720
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::::::: : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
1730 1740 1750 1760 1770 1780
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
1790 1800 1810 1820 1830 1840
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
1850 1860 1870 1880 1890 1900
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
1910 1920 1930 1940 1950 1960
|
|
24
|
EM_PRO:AY766092
|
Mycoplasma phocicerebrale ATCC 51405 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
837 |
905 |
90.1 |
90.1 |
2.9E-12 |
| >>EM_PRO:AY766092 AY766092.1 Mycoplasma phocicerebrale ATCC
51405 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (837 nt)
rev-comp initn: 828 init1: 524 opt: 905 Z-score: 399.3 bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:350-571)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO ATAAAAATAAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
320 330 340 350 360 370
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::::: :::::::::::::::::::::::::: ::: :::::::::::::::: : :
EM_PRO AAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
380 390 400 410 420 430
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
440 450 460 470 480 490
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
500 510 520 530 540 550
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAGC
560 570 580 590 600 610
|
|
25
|
EM_PRO:AY762642
|
Mycoplasma spumans 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
833 |
905 |
90.1 |
90.1 |
2.9E-12 |
| >>EM_PRO:AY762642 AY762642.1 Mycoplasma spumans 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (833 nt)
rev-comp initn: 786 init1: 533 opt: 905 Z-score: 399.3 bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:345-566)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AAGTATAACGAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
320 330 340 350 360 370
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
380 390 400 410 420 430
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
440 450 460 470 480 490
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
500 510 520 530 540 550
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCTAAACCAAC
560 570 580 590 600 610
|
|
26
|
EM_PRO:AY973573
|
Mycoplasma arginini clone V111-1 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
825 |
905 |
90.1 |
90.1 |
2.9E-12 |
| >>EM_PRO:AY973573 AY973573.1 Mycoplasma arginini clone V111-1
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (825 nt)
rev-comp initn: 786 init1: 533 opt: 905 Z-score: 399.4 bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:338-559)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::::::: : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
27
|
EM_PRO:AY737013
|
Mycoplasma arginini 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
824 |
905 |
90.1 |
90.1 |
2.9E-12 |
| >>EM_PRO:AY737013 AY737013.1 Mycoplasma arginini 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (824 nt)
rev-comp initn: 786 init1: 533 opt: 905 Z-score: 399.4 bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:337-558)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::::::: : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
28
|
EM_PRO:AF294994
|
Mycoplasma arginini 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
724 |
905 |
90.1 |
90.1 |
3.0E-12 |
| >>EM_PRO:AF294994 AF294994.1 Mycoplasma arginini 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (724 nt)
rev-comp initn: 786 init1: 533 opt: 905 Z-score: 400.1 bits: 83.1 E(132426985): 3e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:200-421)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
170 180 190 200 210 220
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::::::: : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
230 240 250 260 270 280
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
290 300 310 320 330 340
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
350 360 370 380 390 400
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
410 420 430 440 450 460
|
|
29
|
EM_PRO:DQ847419
|
Mycoplasma gateae strain V-1 16S ribosomal RNA
gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
822 |
896 |
89.7 |
89.7 |
4.7E-12 |
| >>EM_PRO:DQ847419 DQ847419.1 Mycoplasma gateae strain V-1 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (822 nt)
rev-comp initn: 777 init1: 524 opt: 896 Z-score: 395.7 bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: :: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
30
|
EM_PRO:DQ847420
|
Mycoplasma gateae strain KDC 16S ribosomal RNA
gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
822 |
896 |
89.7 |
89.7 |
4.7E-12 |
| >>EM_PRO:DQ847420 DQ847420.1 Mycoplasma gateae strain KDC 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (822 nt)
rev-comp initn: 777 init1: 524 opt: 896 Z-score: 395.7 bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: :: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
31
|
EM_PRO:AY736029
|
Mycoplasma equirhinis strain ATCC 29420 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
821 |
896 |
89.7 |
89.7 |
4.7E-12 |
| >>EM_PRO:AY736029 AY736029.1 Mycoplasma equirhinis strain ATCC
29420 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (821 nt)
rev-comp initn: 824 init1: 580 opt: 896 Z-score: 395.7 bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:333-554)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AGGTCATACAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : ::: : ::::::::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAACCCTCAATTGTCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|
|
32
|
EM_PRO:AY973561
|
Mycoplasma gateae strain ATCC 23392 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
820 |
896 |
89.7 |
89.7 |
4.8E-12 |
| >>EM_PRO:AY973561 AY973561.1 Mycoplasma gateae strain ATCC
23392 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (820 nt)
rev-comp initn: 777 init1: 524 opt: 896 Z-score: 395.7 bits: 82.4 E(132426985): 4.8e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:333-554)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO GATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: :: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
33
|
EM_PRO:AY973562
|
Mycoplasma gateae strain ATCC 23392 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
819 |
896 |
89.7 |
89.7 |
4.8E-12 |
| >>EM_PRO:AY973562 AY973562.1 Mycoplasma gateae strain ATCC
23392 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (819 nt)
rev-comp initn: 777 init1: 524 opt: 896 Z-score: 395.7 bits: 82.4 E(132426985): 4.8e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: :: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
550 560 570 580 590 600
|
|
34
|
EM_EST:DA466599
|
Homo sapiens cDNA clone D3OST2004792, 5' end, mRNA sequence. - Cross-references and related information in:
|
563 |
896 |
89.7 |
89.7 |
5.2E-12 |
| >>EM_EST:DA466599 DA466599.1 Homo sapiens cDNA clone
D3OST2004792, 5' end, mRNA sequence. (563 nt)
rev-comp initn: 786 init1: 533 opt: 896 Z-score: 397.9 bits: 82.3 E(132426985): 5.2e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:3-224)
250 240 230 220 210 200
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
:::::::::::::::::::::::::::::::::::::::::::::::
EM_EST ATAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
10 20 30 40
190 180 170 160 150 140
AF241- GATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTAGACGGAGATTTCCGAAT
::::::::::::::::: ::: :::::::::::::::: : : ::: :::::::::::
EM_EST GATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGATCCGGGGATTTCCGAAT
50 60 70 80 90 100
130 120 110 100 90 80
AF241- GGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTGAATCCATAGCCGAATGA
:::::::::::::: : :::: : :::: :::: : :: ::::: ::::: :::::::
EM_EST GGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ACCGATGAATACATAGTCGAATGA
110 120 130 140 150 160
70 60 50 40 30 20
AF241- TGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAAAAAAAAAAAAA
:::::::::::::::::::::::::::::::::::::::::::::::: ::: ::
EM_EST AGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAATAAAGAATGAT
170 180 190 200 210 220
10
AF241- AAAAAAAAA
EM_EST TCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAACATTCGTTGTTGGGGTTG
230 240 250 260 270 280
|
|
35
|
EM_PRO:DQ840513
|
Mycoplasma phocicerebrale strain CSL 5195S2 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2207 |
887 |
89.2 |
89.2 |
6.1E-12 |
| >>EM_PRO:DQ840513 DQ840513.1 Mycoplasma phocicerebrale strain
CSL 5195S2 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (2207 nt)
rev-comp initn: 768 init1: 515 opt: 887 Z-score: 386.1 bits: 82.1 E(132426985): 6.1e-12
banded Smith-Waterman score: 887; 89.2% identity (89.2% similar) in 223 nt overlap (236-14:1717-1938)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAATATAAATTTAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
1690 1700 1710 1720 1730 1740
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: :: : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTGA
1750 1760 1770 1780 1790 1800
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGTTAATCCTCAATTATCAT-ATCGATG
1810 1820 1830 1840 1850 1860
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
1870 1880 1890 1900 1910 1920
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
1930 1940 1950 1960 1970 1980
|
|
36
|
EM_PRO:AY772217
|
Mycoplasma auris 16S ribosomal RNA gene,
partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete
sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
829 |
887 |
89.2 |
89.2 |
7.6E-12 |
| >>EM_PRO:AY772217 AY772217.1 Mycoplasma auris 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (829 nt)
rev-comp initn: 819 init1: 533 opt: 887 Z-score: 391.9 bits: 81.8 E(132426985): 7.6e-12
banded Smith-Waterman score: 887; 89.2% identity (89.2% similar) in 223 nt overlap (236-14:339-560)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : : :: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTCATACTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
:::: :::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGACATAGCCCAAACCAA
550 560 570 580 590 600
|
|
37
|
EM_PRO:AY780803
|
Mycoplasma subdolum strain ATCC 29870 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
823 |
881 |
88.3 |
88.3 |
1.0E-11 |
| >>EM_PRO:AY780803 AY780803.1 Mycoplasma subdolum strain ATCC
29870 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (823 nt)
rev-comp initn: 864 init1: 864 opt: 881 Z-score: 389.5 bits: 81.3 E(132426985): 1e-11
banded Smith-Waterman score: 881; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:334-556)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CATACAAAAATAATAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::::: :::::::::::::::::::::::::: ::::::::: :::::: ::: ::
EM_PRO AAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCCGGAAATAGGCAACTA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::::: :::::::::::::::::::::::: : :::: : :::: :::: :: :::
EM_PRO GACGGGGATTTCCGAATGGGGAAACCTAATGGAGCTAATCCTCCATTGCCATAGTCAGTG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
:::::::::: ::::: :::::::: ::::::::::::::::::::::::: :::::::
EM_PRO AATCCATAGCTGAATGGCGAGACACGATGTGAATTGAAACATCTCAGTAGCATCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCTAAACCAGC
550 560 570 580 590 600
|
|
38
|
EM_PRO:DQ847417
|
Mycoplasma canadense strain 275C 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
825 |
878 |
88.8 |
88.8 |
1.2E-11 |
| >>EM_PRO:DQ847417 DQ847417.1 Mycoplasma canadense strain 275C
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (825 nt)
rev-comp initn: 768 init1: 515 opt: 878 Z-score: 388.2 bits: 81.1 E(132426985): 1.2e-11
banded Smith-Waterman score: 878; 88.8% identity (88.8% similar) in 223 nt overlap (236-14:335-556)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::: ::::::::: : : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATGAACTGTGA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|
|
39
|
EM_PRO:AY800341
|
Mycoplasma canadense strain ATCC 29418 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
821 |
878 |
88.8 |
88.8 |
1.2E-11 |
| >>EM_PRO:AY800341 AY800341.1 Mycoplasma canadense strain ATCC
29418 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (821 nt)
rev-comp initn: 768 init1: 515 opt: 878 Z-score: 388.3 bits: 81.1 E(132426985): 1.2e-11
banded Smith-Waterman score: 878; 88.8% identity (88.8% similar) in 223 nt overlap (236-14:334-555)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
310 320 330 340 350 360
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::: ::::::::: : : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATGAACTGTGA
370 380 390 400 410 420
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
430 440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|
|
40
|
EM_PRO:EU925158
|
Mycoplasma canadense strain 466 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer,
complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2163 |
872 |
87.9 |
88.8 |
1.3E-11 |
| >>EM_PRO:EU925158 EU925158.1 Mycoplasma canadense strain 466
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (2163 nt)
rev-comp initn: 762 init1: 509 opt: 872 Z-score: 380.0 bits: 80.9 E(132426985): 1.3e-11
banded Smith-Waterman score: 872; 87.9% identity (88.8% similar) in 223 nt overlap (236-14:1686-1907)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::.:::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGRATGCCTTGGGTCTGG
1660 1670 1680 1690 1700 1710
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::::::::::::::::::::::::::::::: ::: :::: :::::::.: : : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATRAACTGTGA
1720 1730 1740 1750 1760 1770
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: ::::::::::::::::::::::::: : :::: : :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
1780 1790 1800 1810 1820 1830
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::: :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
1840 1850 1860 1870 1880 1890
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
1900 1910 1920 1930 1940 1950
|
|
41
|
EM_PRO:GU905028
|
Mycoplasma phocidae strain C264-NAS 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
2208 |
869 |
88.3 |
88.3 |
1.6E-11 |
| >>EM_PRO:GU905028 GU905028.1 Mycoplasma phocidae strain
C264-NAS 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2208 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 378.7 bits: 80.7 E(132426985): 1.6e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:1706-1927)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
1680 1690 1700 1710 1720 1730
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
1740 1750 1760 1770 1780 1790
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
1800 1810 1820 1830 1840 1850
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
1860 1870 1880 1890 1900 1910
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
1920 1930 1940 1950 1960 1970
|
|
42
|
EM_PRO:AY796064
|
Mycoplasma buccale strain ATCC 23636 16S
ribosomal RNA gene, 16S-23S ribosomal RNA intergenic spacer, and 23S
ribosomal RNA gene, complete sequence. - Cross-references and related information in:
|
864 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:AY796064 AY796064.1 Mycoplasma buccale strain ATCC
23636 16S ribosomal RNA gene, 16S-23S ribosomal RNA
intergenic spacer, and 23S ribosomal RNA gene, complete
sequence. (864 nt)
rev-comp initn: 810 init1: 515 opt: 869 Z-score: 384.3 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:376-597)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
:::::::::::::::::::::::::::: :
EM_PRO CAATAACTGACAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTAG
350 360 370 380 390 400
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
:::::: :::::::::::::::::::::::::: :::::::::::::::: :::: :
EM_PRO TAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAACGA
410 420 430 440 450 460
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
:::: ::::::::::::::::::::::::: : :::: : :::: :::: : : ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-TTTGATG
470 480 490 500 510 520
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: : ::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCAAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
530 540 550 560 570 580
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACTAGC
590 600 610 620 630 640
|
|
43
|
EM_PRO:DQ840484
|
Mycoplasma phocidae strain CSL 4801 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
844 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840484 DQ840484.1 Mycoplasma phocidae strain CSL
4801 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.4 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
390 400 410 420 430 440
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
450 460 470 480 490 500
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
510 520 530 540 550 560
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
570 580 590 600 610 620
|
|
44
|
EM_PRO:DQ840486
|
Mycoplasma phocidae strain CSL 4949 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
844 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840486 DQ840486.1 Mycoplasma phocidae strain CSL
4949 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.4 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
390 400 410 420 430 440
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
450 460 470 480 490 500
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
510 520 530 540 550 560
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
570 580 590 600 610 620
|
|
45
|
EM_PRO:DQ840487
|
Mycoplasma phocidae strain CSL 4957 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
844 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840487 DQ840487.1 Mycoplasma phocidae strain CSL
4957 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.4 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
390 400 410 420 430 440
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
450 460 470 480 490 500
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
510 520 530 540 550 560
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACAGGGAAAAGCCCAAACCAAC
570 580 590 600 610 620
|
|
46
|
EM_PRO:DQ840485
|
Mycoplasma phocidae strain CSL 4945 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
844 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840485 DQ840485.1 Mycoplasma phocidae strain CSL
4945 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.4 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
390 400 410 420 430 440
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
450 460 470 480 490 500
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
510 520 530 540 550 560
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
570 580 590 600 610 620
|
|
47
|
EM_PRO:DQ840488
|
Mycoplasma phocidae strain CSL 5364 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
844 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840488 DQ840488.1 Mycoplasma phocidae strain CSL
5364 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.4 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
330 340 350 360 370 380
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
390 400 410 420 430 440
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
450 460 470 480 490 500
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
510 520 530 540 550 560
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
570 580 590 600 610 620
|
|
48
|
EM_PRO:DQ840492
|
Mycoplasma phocidae strain CSL 5263 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
833 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840492 DQ840492.1 Mycoplasma phocidae strain CSL
5263 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (833 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.5 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:342-563)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO TACATAAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
320 330 340 350 360 370
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
380 390 400 410 420 430
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
440 450 460 470 480 490
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
500 510 520 530 540 550
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
560 570 580 590 600 610
|
|
49
|
EM_PRO:DQ840491
|
Mycoplasma phocidae strain CSL 5410 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
832 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840491 DQ840491.1 Mycoplasma phocidae strain CSL
5410 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (832 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.5 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:341-562)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO ATACATAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
320 330 340 350 360 370
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
380 390 400 410 420 430
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|
|
50
|
EM_PRO:DQ840490
|
Mycoplasma phocidae strain CSL 4693 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic
spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. - Cross-references and related information in:
|
832 |
869 |
88.3 |
88.3 |
2.0E-11 |
| >>EM_PRO:DQ840490 DQ840490.1 Mycoplasma phocidae strain CSL
4693 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (832 nt)
rev-comp initn: 785 init1: 490 opt: 869 Z-score: 384.5 bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:341-562)
250 240 230 220 210
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
::::::::::::::::::::::::::::::
EM_PRO ATACATAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
320 330 340 350 360 370
200 190 180 170 160 150
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
::::: : :::::::::::::::::::::::::: ::: :::::::::::: ::: :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
380 390 400 410 420 430
140 130 120 110 100 90
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
::: :::::::::::::::::::: :::: : :::: : :::: :::: ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
440 450 460 470 480
80 70 60 50 40 30
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
::::::::: ::::::: :::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
490 500 510 520 530 540
20 10
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA
:::::: ::: ::
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
550 560 570 580 590 600
|