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FASTA Results


Alignments

Selection:
  • in format
Align. DB:ID Source Length Score Identities Positives E()
1 EM_HTG:AF241217
Homo sapiens unknown sequence.
Cross-references and related information in:
249 1245 100.0 100.0 6.2E-20
>>EM_HTG:AF241217 AF241217.1 Homo sapiens unknown sequence. (249 nt)
 initn: 1245 init1: 1245 opt: 1245  Z-score: 546.6  bits: 108.6 E(132426985): 6.2e-20
banded Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 249 nt overlap (1-249:1-249)

               10        20        30        40        50        60
AF2412 TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGAGATGTTTCAATTCACAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGAGATGTTTCAATTCACAG
               10        20        30        40        50        60

               70        80        90       100       110       120
AF2412 CGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATTAGGCATTACCCTAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG CGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATTAGGCATTACCCTAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
AF2412 GGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAGCTAAACGAAGCTTATCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG GGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAGCTAAACGAAGCTTATCG
              130       140       150       160       170       180

              190       200       210       220       230       240
AF2412 CAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCCACCAAAAACTCTTGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_HTG CAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCCACCAAAAACTCTTGCTT
              190       200       210       220       230       240

                
AF2412 ATCCCGCGT
       :::::::::
EM_HTG ATCCCGCGT
                

2 EM_PRO:FJ876260
Mycoplasma orale strain MT-4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2231 1127 99.1 99.1 1.9E-17
>>EM_PRO:FJ876260 FJ876260.1 Mycoplasma orale strain MT-4 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (2231 nt)
rev-comp initn: 1110 init1: 1110 opt: 1127  Z-score: 484.9  bits: 100.4 E(132426985): 1.9e-17
banded Smith-Waterman score: 1127; 99.1% identity (99.1% similar) in 229 nt overlap (242-14:1731-1959)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
             1710      1720      1730      1740      1750      1760

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
             1770      1780      1790      1800      1810      1820

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
             1830      1840      1850      1860      1870      1880

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
             1890      1900      1910      1920      1930      1940

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
             1950      1960      1970      1980      1990      2000

3 EM_PRO:AF294995
Mycoplasma orale 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
738 1127 99.1 99.1 2.4E-17
>>EM_PRO:AF294995 AF294995.1 Mycoplasma orale 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (738 nt)
rev-comp initn: 1110 init1: 1110 opt: 1127  Z-score: 491.5  bits: 100.0 E(132426985): 2.4e-17
banded Smith-Waterman score: 1127; 99.1% identity (99.1% similar) in 229 nt overlap (242-14:248-476)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
       220       230       240       250       260       270       

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       280       290       300       310       320       330       

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       340       350       360       370       380       390       

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       400       410       420       430       440       450       

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
       460       470       480       490       500       510       

4 EM_PRO:AY737010
Mycoplasma orale 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
882 1118 98.7 98.7 3.8E-17
>>EM_PRO:AY737010 AY737010.1 Mycoplasma orale 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (882 nt)
rev-comp initn: 1101 init1: 1101 opt: 1118  Z-score: 486.7  bits: 99.4 E(132426985): 3.8e-17
banded Smith-Waterman score: 1118; 98.7% identity (98.7% similar) in 229 nt overlap (242-14:385-613)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TTATACGTAATTAAAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
          360       370       380       390       400       410    

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
          420       430       440       450       460       470    

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
          480       490       500       510       520       530    

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGGTGAATCCATAGCCGAATGACGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
          540       550       560       570       580       590    

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGGTTCCCCTAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
          600       610       620       630       640       650    

5 EM_PRO:AY762640
Mycoplasma indiense 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
870 1100 97.8 97.8 9.8E-17
>>EM_PRO:AY762640 AY762640.1 Mycoplasma indiense 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (870 nt)
rev-comp initn: 1083 init1: 1083 opt: 1100  Z-score: 479.4  bits: 98.0 E(132426985): 9.8e-17
banded Smith-Waterman score: 1100; 97.8% identity (97.8% similar) in 229 nt overlap (242-14:372-600)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AAATACTTATACGTAATATATAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
             350       360       370       380       390       400 

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATAAG
             410       420       430       440       450       460 

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
             470       480       490       500       510       520 

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
EM_PRO TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAACAGC
             530       540       550       560       570       580 

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       ::::: :::::: ::: ::                                         
EM_PRO AGGAAAAGAAAATAAAGAATGATTCCCTGAGTAGTGGCGAGCGAACGGGGAAAAGCCTAA
             590       600       610       620       630       640 

6 EM_PRO:CP001047
Mycoplasma arthritidis 158L3-1, complete genome.
820453 932 91.5 91.5 2.1E-13
>>EM_PRO:CP001047 CP001047.1 Mycoplasma arthritidis 158L3-1,
complete genome. (820453 nt)
rev-comp initn: 863 init1: 565 opt: 932  Z-score: 379.5  bits: 87.0 E(132426985): 2.1e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:193163-193384)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
         193140    193150    193160    193170    193180    193190  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
         193200    193210    193220    193230    193240    193250  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
        :::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
         193260    193270    193280    193290    193300     193310 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::  
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
          193320    193330    193340    193350    193360    193370 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
          193380    193390    193400    193410    193420    193430 

7 EM_PRO:FP236530
Mycoplasma hominis strain PG21, chromosome, complete genome.
665445 926 90.0 90.0 2.8E-13
>>EM_PRO:FP236530 FP236530.1 Mycoplasma hominis strain PG21,
chromosome, complete genome. (665445 nt)
 initn: 806 init1: 553 opt: 926  Z-score: 377.0  bits: 86.5 E(132426985): 2.8e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (14-242:491878-492105)

                                10        20        30        40   
AF2412                  TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGA
                                     :: ::: :::::::::::::::::::::::
EM_PRO CCCGTTCGCTCGCCACTACTTAGGGAATCATTCTTTATTTTCTCTTCCTGCTGCTACTGA
    491850    491860    491870    491880    491890    491900       

            50        60        70        80        90       100   
AF2412 GATGTTTCAATTCACAGCGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATT
       ::::::::::::::::::::::::: ::::::: ::::: ::::: ::: ::::: ::::
EM_PRO GATGTTTCAATTCACAGCGTGTCTCTTCATTCGACTATGAATTCATCGA-TATGATAATT
    491910    491920    491930    491940    491950     491960      

           110       120       130       140       150       160   
AF2412 AGGCATTACCCTAATTAGGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAG
         : :::: :  ::::::::::::::::::::::::: :::  :::  ::: ::::::::
EM_PRO GAGGATTAGCTCAATTAGGTTTCCCCATTCGGAAATCCCCGGATAACAGCTTATTTCCAG
     491970    491980    491990    492000    492010    492020      

           170       180       190       200       210       220   
AF2412 CTAAACGAAGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
       :::: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CTAACCGAGGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
     492030    492040    492050    492060    492070    492080      

           230       240                                           
AF2412 ACCAAAAACTCTTGCTTATCCCGCGT                                  
       ::::::::::::::::: :                                         
EM_PRO ACCAAAAACTCTTGCTTGTTTAATAGTTTTGTTAATTGTATGACCTATTGTTTGTCTTAT
     492090    492100    492110    492120    492130    492140      

8 EM_PRO:FP236530
Mycoplasma hominis strain PG21, chromosome, complete genome.
665445 926 90.0 90.0 2.8E-13
>>EM_PRO:FP236530 FP236530.1 Mycoplasma hominis strain PG21,
chromosome, complete genome. (665445 nt)
 initn: 806 init1: 553 opt: 926  Z-score: 377.0  bits: 86.5 E(132426985): 2.8e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (14-242:329859-330086)

                                10        20        30        40   
AF2412                  TTTTTTTTTTTTTTTTTTTTTTTTCTCTTCCTGCTGCTACTGA
                                     :: ::: :::::::::::::::::::::::
EM_PRO CCCGTTCGCTCGCCACTACTTAGGGAATCATTCTTTATTTTCTCTTCCTGCTGCTACTGA
   329830    329840    329850    329860    329870    329880        

            50        60        70        80        90       100   
AF2412 GATGTTTCAATTCACAGCGTGTCTCATCATTCGGCTATGGATTCACCGATTATGACAATT
       ::::::::::::::::::::::::: ::::::: ::::: ::::: ::: ::::: ::::
EM_PRO GATGTTTCAATTCACAGCGTGTCTCTTCATTCGACTATGAATTCATCGA-TATGATAATT
   329890    329900    329910    329920    329930     329940       

           110       120       130       140       150       160   
AF2412 AGGCATTACCCTAATTAGGTTTCCCCATTCGGAAATCTCCGTCTAAATGCTCATTTCCAG
         : :::: :  ::::::::::::::::::::::::: :::  :::  ::: ::::::::
EM_PRO GAGGATTAGCTCAATTAGGTTTCCCCATTCGGAAATCCCCGGATAACAGCTTATTTCCAG
    329950    329960    329970    329980    329990    330000       

           170       180       190       200       210       220   
AF2412 CTAAACGAAGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
       :::: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO CTAACCGAGGCTTATCGCAGGTAATCACGTCCTTCATCGACTTCCAGACCCAAGGCATCC
    330010    330020    330030    330040    330050    330060       

           230       240                                           
AF2412 ACCAAAAACTCTTGCTTATCCCGCGT                                  
       ::::::::::::::::: :                                         
EM_PRO ACCAAAAACTCTTGCTTGTTTAATAGTTTTGTTAATTGTATGACCTATTGTTTGTCTTTA
    330070    330080    330090    330100    330110    330120       

9 EM_PRO:EU859975
Mycoplasma salivarium strain MP1166 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2219 944 90.8 90.8 3.0E-13
>>EM_PRO:EU859975 EU859975.1 Mycoplasma salivarium strain
MP1166 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2219 nt)
rev-comp initn: 881 init1: 581 opt: 944  Z-score: 409.5  bits: 86.4 E(132426985): 3e-13
banded Smith-Waterman score: 944; 90.8% identity (90.8% similar) in 229 nt overlap (242-14:1716-1943)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATTATATTTATACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
        1690      1700      1710      1720      1730      1740     

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::: ::::::: ::::::::::: :::::::::::::: :::::::::::::::: ::
EM_PRO GTCTGAAAGTCGAAGAAGGACGTGACTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAG
        1750      1760      1770      1780      1790      1800     

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CATTTAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
        1810      1820      1830      1840      1850      1860     

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
        : ::::::::::::: : :::: ::::::::::::::::::::::::::::::::::::
EM_PRO CCAGTGAATCCATAGCTGGATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
         1870      1880      1890      1900      1910      1920    

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTTCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
         1930      1940      1950      1960      1970      1980    

10 EM_PRO:AF443617
Mycoplasma hominis thiamine biosynthesis protein (thiI) gene, partial cds; hypothetical protein, 50S ribosomal protein L33 (rpmG), hypothetical protein, and transcription antitermination protein (nusG) genes, complete cds; rrnB operon, complete sequence; and endo-1,4-beta-glucanase and hypothetical protein genes, complete cds.
10508 926 90.0 90.0 5.3E-13
>>EM_PRO:AF443617 AF443617.3 Mycoplasma hominis thiamine
biosynthesis protein (thiI) gene, partial cds; hypothetical
protein, 50S ribosomal protein L33 (rpmG), hypothetical
protein, and transcription antitermination protein (nusG)
genes, complete cds; rrnB operon, complete sequence; and
endo-1,4-beta-glucanase and hypothetical protein genes,
complete cds. (10508 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 392.9  bits: 85.6 E(132426985): 5.3e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:5799-6026)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
     5770      5780      5790      5800      5810      5820        

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
     5830      5840      5850      5860      5870      5880        

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
     5890      5900      5910      5920      5930      5940        

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
      5950      5960      5970      5980      5990      6000       

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
      6010      6020      6030      6040      6050      6060       

11 EM_PRO:AF443616
Mycoplasma hominis DNA-dependent RNA polymerase alpha chain gene, partial cds; 50S ribosomal protein L17 and 50S ribosomal protein L32 genes, complete cds; rrnA operon, complete sequence; 50S ribosomal protein L10 and 50S ribosomal protein L7/L12 genes, complete cds; and DNA-dependent RNA polymerase beta chain (rpoB) gene, partial cds.
10244 926 90.0 90.0 5.4E-13
>>EM_PRO:AF443616 AF443616.3 Mycoplasma hominis DNA-dependent
RNA polymerase alpha chain gene, partial cds; 50S ribosomal
protein L17 and 50S ribosomal protein L32 genes, complete
cds; rrnA operon, complete sequence; 50S ribosomal protein
L10 and 50S ribosomal protein L7/L12 genes, complete cds;
and DNA-dependent RNA polymerase beta chain (rpoB) gene,
partial cds. (10244 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 393.0  bits: 85.6 E(132426985): 5.4e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:3116-3343)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
        3090      3100      3110      3120      3130      3140     

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
        3150      3160      3170      3180      3190      3200     

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
        3210      3220      3230      3240      3250      3260     

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
         3270      3280      3290      3300      3310      3320    

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
         3330      3340      3350      3360      3370      3380    

12 EM_PRO:EU859980
Mycoplasma arthritidis strain 91021 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2222 932 91.5 91.5 5.6E-13
>>EM_PRO:EU859980 EU859980.1 Mycoplasma arthritidis strain
91021 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2222 nt)
rev-comp initn: 800 init1: 565 opt: 932  Z-score: 404.6  bits: 85.5 E(132426985): 5.6e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:1726-1947)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
        1700      1710      1720      1730      1740      1750     

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
        1760      1770      1780      1790      1800      1810     

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
        :::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
        1820      1830      1840      1850      1860       1870    

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::  
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
         1880      1890      1900      1910      1920      1930    

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
         1940      1950      1960      1970      1980      1990    

13 EM_PRO:AY786574
Mycoplasma salivarium 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
862 935 90.4 90.4 6.0E-13
>>EM_PRO:AY786574 AY786574.1 Mycoplasma salivarium 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (862 nt)
rev-comp initn: 872 init1: 572 opt: 935  Z-score: 411.5  bits: 85.4 E(132426985): 6e-13
banded Smith-Waterman score: 935; 90.4% identity (90.4% similar) in 229 nt overlap (242-14:364-591)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATTATATTTATACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
           340       350       360       370       380       390   

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       ::::: ::::::: ::::::::::: :::::::::::::: :::::::: ::::::: ::
EM_PRO GTCTGAAAGTCGAAGAAGGACGTGACTACCTGCGATAAGCCTCGTTTAGTTGGAAATAAG
           400       410       420       430       440       450   

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       ::::::::::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CATTTAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
           460       470       480       490       500       510   

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
        : ::::::::::::: : :::: ::::::::::::::::::::::::::::::::::::
EM_PRO CCAGTGAATCCATAGCTGGATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
            520       530       540       550       560       570  

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
            580       590       600       610       620       630  

14 EM_PRO:AY973560
Mycoplasma arthritidis strain ATCC 19611 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
864 932 91.5 91.5 7.0E-13
>>EM_PRO:AY973560 AY973560.1 Mycoplasma arthritidis strain
ATCC 19611 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (864 nt)
rev-comp initn: 800 init1: 565 opt: 932  Z-score: 410.2  bits: 85.2 E(132426985): 7e-13
banded Smith-Waterman score: 932; 91.5% identity (91.5% similar) in 223 nt overlap (236-14:376-597)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TGCATAACAAAAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
         350       360       370       380       390       400     

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: :::::::::::::::: :::: :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAATTA
         410       420       430       440       450       460     

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
        :::: :::::::::::::::::::::::::: : :::: : ::::: :::: :::: ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTAAGCTAATCCTTAATTATCAT-ATCGATG
         470       480       490       500       510        520    

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::  
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGACA
          530       540       550       560       570       580    

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
          590       600       610       620       630       640    

15 EM_PRO:AY055378
Mycoplasma hominis strain PG21 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
1630 926 90.0 90.0 8.3E-13
>>EM_PRO:AY055378 AY055378.1 Mycoplasma hominis strain PG21
23S ribosomal RNA gene, partial sequence. (1630 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 404.0  bits: 85.0 E(132426985): 8.3e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:7-234)

    250       240       230       220       210       200          
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
              : :::::::::::::::::::::::::::::::::::::::::::::::::::
EM_PRO  TATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
                10        20        30        40        50         

    190       180       170       160       150       140          
AF241- GATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTAGACGGAGATTTCCGAAT
       ::::::::::::::::: ::: :::::::::::: :::  :::  ::: :::::::::::
EM_PRO GATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTATCCGGGGATTTCCGAAT
      60        70        80        90       100       110         

    130       120       110       100        90        80          
AF241- GGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTGAATCCATAGCCGAATGA
       ::::::::::::::  : :::: :  :::: :::: :::: ::::: ::::: :::::::
EM_PRO GGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATGAATTCATAGTCGAATGA
     120       130       140       150        160       170        

     70        60        50        40        30        20          
AF241- TGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAAAAAAAAAAAAA
        :::::::::::::::::::::::::::::::::::::::::::::::: ::: ::    
EM_PRO AGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAATAAAGAATGAT
      180       190       200       210       220       230        

     10                                                            
AF241- AAAAAAAAA                                                   
                                                                   
EM_PRO TCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAACACATGTTGTTGGGGTTG
      240       250       260       270       280       290        

16 EM_PRO:AY738737
Mycoplasma hominis strain ATCC 27545 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
823 926 90.0 90.0 9.7E-13
>>EM_PRO:AY738737 AY738737.1 Mycoplasma hominis strain ATCC
27545 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (823 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 408.0  bits: 84.7 E(132426985): 9.7e-13
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:331-558)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
              310       320       330       340       350       360

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
              370       380       390       400       410       420

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
              430       440       450       460       470          

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
     480       490       500       510       520       530         

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
     540       550       560       570       580       590         

17 EM_PRO:AF294989
Mycoplasma hominis isolate 1 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
723 926 90.0 90.0 1.0E-12
>>EM_PRO:AF294989 AF294989.1 Mycoplasma hominis isolate 1
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (723 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 408.8  bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:194-421)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
           170       180       190       200       210       220   

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
           230       240       250       260       270       280   

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
           290       300       310       320       330       340   

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
            350       360       370       380       390       400  

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
            410       420       430       440       450       460  

18 EM_PRO:AF294990
Mycoplasma hominis isolate 2 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
722 926 90.0 90.0 1.0E-12
>>EM_PRO:AF294990 AF294990.1 Mycoplasma hominis isolate 2
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (722 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 408.8  bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:193-420)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
            170       180       190       200       210       220  

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
            230       240       250       260       270       280  

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
            290       300       310       320       330       340  

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
             350       360       370       380       390       400 

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
             410       420       430       440       450       460 

19 EM_PRO:AF294991
Mycoplasma hominis isolate 3 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
721 926 90.0 90.0 1.0E-12
>>EM_PRO:AF294991 AF294991.1 Mycoplasma hominis isolate 3
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (721 nt)
rev-comp initn: 806 init1: 553 opt: 926  Z-score: 408.8  bits: 84.7 E(132426985): 1e-12
banded Smith-Waterman score: 926; 90.0% identity (90.0% similar) in 229 nt overlap (242-14:192-419)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     : ::::::::::::::::::::::::::::
EM_PRO AATAGGTCATACAATTAACAAAACTATTAAACAAGCAAGAGTTTTTGGTGGATGCCTTGG
             170       180       190       200       210       220 

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::::::::::::::::::::::::::::::::::::::: ::: :::::::::::: ::
EM_PRO GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAG
             230       240       250       260       270       280 

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :  :::  ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :
EM_PRO CTGTTATCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-A
             290       300       310       320       330        340

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       ::: ::::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::
EM_PRO TCGATGAATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
              350       360       370       380       390       400

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       :::::::::::: ::: ::                                         
EM_PRO AGGAAGAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAGAGCCCAA
              410       420       430       440       450       460

20 EM_PRO:AY973563
Mycoplasma hyosynoviae strain ATCC 25591 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
851 919 90.6 90.6 1.4E-12
>>EM_PRO:AY973563 AY973563.1 Mycoplasma hyosynoviae strain
ATCC 25591 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (851 nt)
rev-comp initn: 894 init1: 603 opt: 919  Z-score: 404.9  bits: 84.2 E(132426985): 1.4e-12
banded Smith-Waterman score: 919; 90.6% identity (90.6% similar) in 224 nt overlap (237-14:359-581)

                      250       240       230       220       210  
AF241-                   ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATAGGTCATACATATTAACTATTAAATGTACAAGAGTTTTTGGTGGATGCCTTGGGTCTG
      330       340       350       360       370       380        

            200       190       180       170       160       150  
AF241- GAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTT
       ::::::::::::::::::::::::::::::::::: :::::::: :::: :: :::: : 
EM_PRO GAAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGTTGGATATAAGCAATG
      390       400       410       420       430       440        

            140       130       120       110       100        90  
AF241- AGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGT
       :::::: :::::::::::::::::::::::::  : :::: :  ::::::::: ::: ::
EM_PRO AGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTGTCAT-ATCAGT
      450       460       470       480       490       500        

             80        70        60        50        40        30  
AF241- GAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAA
       ::::::::::: ::::::  ::::::::::::::::::::::::::::::::::::::::
EM_PRO GAATCCATAGCTGAATGACAAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAA
       510       520       530       540       550       560       

             20        10                                          
AF241- GAGAAAAAAAAAAAAAAAAAAAAAAAA                                 
        :::::: ::: ::                                              
EM_PRO AAGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAA
       570       580       590       600       610       620       

21 EM_PRO:DQ847421
Mycoplasma equirhinis strain M432-72 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
824 914 90.6 90.6 1.8E-12
>>EM_PRO:DQ847421 DQ847421.1 Mycoplasma equirhinis strain
M432-72 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (824 nt)
rev-comp initn: 842 init1: 589 opt: 914  Z-score: 403.1  bits: 83.8 E(132426985): 1.8e-12
banded Smith-Waterman score: 914; 90.6% identity (90.6% similar) in 223 nt overlap (236-14:333-554)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AGGTCATACAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            310       320       330       340       350       360  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            370       380       390       400       410       420  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  ::::::::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTGTCAT-ATCGATG
            430       440       450       460       470        480 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
             490       500       510       520       530       540 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             550       560       570       580       590       600 

22 EM_PRO:AY800342
Mycoplasma faucium strain ATCC 25293 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
855 911 88.6 88.6 2.1E-12
>>EM_PRO:AY800342 AY800342.1 Mycoplasma faucium strain ATCC
25293 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (855 nt)
rev-comp initn: 894 init1: 894 opt: 911  Z-score: 401.6  bits: 83.6 E(132426985): 2.1e-12
banded Smith-Waterman score: 911; 88.6% identity (88.6% similar) in 229 nt overlap (242-14:360-588)

                           250       240       230       220       
AF241-                        ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AACAATAGGTCATACATATTTAACTATTAAATAAGCAAGAGTTTTTGGTGGATGCCTTGG
     330       340       350       360       370       380         

       210       200       190       180       170       160       
AF241- GTCTGGAAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAG
       :::: :::::::: :::::::::::::::::::::::::: :::::::: ::::::: : 
EM_PRO GTCTAGAAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGTTGGAAATAAA
     390       400       410       420       430       440         

       150       140       130       120       110       100       
AF241- CATTTAGACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAA
       :::: :::::: :::::::::::::::::::::::::  : :::: :  :::: ::::: 
EM_PRO CATTGAGACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCATAG
     450       460       470       480       490       500         

        90        80        70        60        50        40       
AF241- TCGGTGAATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGC
       :: :::::: :::::: :::::: :::::::: :::::::::::::::::::::: :: :
EM_PRO TCAGTGAATACATAGCTGAATGAAGAGACACGTTGTGAATTGAAACATCTCAGTAACAAC
     510       520       530       540       550       560         

        30        20        10                                     
AF241- AGGAAGAGAAAAAAAAAAAAAAAAAAAAAAAA                            
       ::::: :::::: ::: ::                                         
EM_PRO AGGAAAAGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAAAGCCCAA
     570       580       590       600       610       620         

23 EM_PRO:HM179556
Mycoplasma arginini strain EF-Hungary 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2745 905 90.1 90.1 2.2E-12
>>EM_PRO:HM179556 HM179556.1 Mycoplasma arginini strain
EF-Hungary 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (2745 nt)
rev-comp initn: 786 init1: 533 opt: 905  Z-score: 392.2  bits: 83.5 E(132426985): 2.2e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:1692-1913)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            1670      1680      1690      1700      1710      1720 

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::::::  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
            1730      1740      1750      1760      1770      1780 

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
            1790      1800      1810      1820      1830       1840

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
             1850      1860      1870      1880      1890      1900

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
             1910      1920      1930      1940      1950      1960

24 EM_PRO:AY766092
Mycoplasma phocicerebrale ATCC 51405 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
837 905 90.1 90.1 2.9E-12
>>EM_PRO:AY766092 AY766092.1 Mycoplasma phocicerebrale ATCC
51405 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (837 nt)
rev-comp initn: 828 init1: 524 opt: 905  Z-score: 399.3  bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:350-571)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATAAAAATAAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
     320       330       340       350       360       370         

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::::: :::::::::::::::::::::::::: ::: ::::::::::::::::  : :
EM_PRO AAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
     380       390       400       410       420       430         

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
     440       450       460       470       480       490         

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
      500       510       520       530       540       550        

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAGC
      560       570       580       590       600       610        

25 EM_PRO:AY762642
Mycoplasma spumans 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
833 905 90.1 90.1 2.9E-12
>>EM_PRO:AY762642 AY762642.1 Mycoplasma spumans 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (833 nt)
rev-comp initn: 786 init1: 533 opt: 905  Z-score: 399.3  bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:345-566)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AAGTATAACGAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
          320       330       340       350       360       370    

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
          380       390       400       410       420       430    

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
          440       450       460       470       480        490   

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
           500       510       520       530       540       550   

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCTAAACCAAC
           560       570       580       590       600       610   

26 EM_PRO:AY973573
Mycoplasma arginini clone V111-1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
825 905 90.1 90.1 2.9E-12
>>EM_PRO:AY973573 AY973573.1 Mycoplasma arginini clone V111-1
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (825 nt)
rev-comp initn: 786 init1: 533 opt: 905  Z-score: 399.4  bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:338-559)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
       310       320       330       340       350       360       

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::::::  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
       370       380       390       400       410       420       

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
       430       440       450       460       470        480      

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
        490       500       510       520       530       540      

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
        550       560       570       580       590       600      

27 EM_PRO:AY737013
Mycoplasma arginini 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
824 905 90.1 90.1 2.9E-12
>>EM_PRO:AY737013 AY737013.1 Mycoplasma arginini 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (824 nt)
rev-comp initn: 786 init1: 533 opt: 905  Z-score: 399.4  bits: 83.1 E(132426985): 2.9e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:337-558)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
        310       320       330       340       350       360      

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::::::  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
        370       380       390       400       410       420      

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
        430       440       450       460       470        480     

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
         490       500       510       520       530       540     

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
         550       560       570       580       590       600     

28 EM_PRO:AF294994
Mycoplasma arginini 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
724 905 90.1 90.1 3.0E-12
>>EM_PRO:AF294994 AF294994.1 Mycoplasma arginini 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (724 nt)
rev-comp initn: 786 init1: 533 opt: 905  Z-score: 400.1  bits: 83.1 E(132426985): 3e-12
banded Smith-Waterman score: 905; 90.1% identity (90.1% similar) in 223 nt overlap (236-14:200-421)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
     170       180       190       200       210       220         

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::::::  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGA
     230       240       250       260       270       280         

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
     290       300       310       320       330       340         

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATACATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
      350       360       370       380       390       400        

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
      410       420       430       440       450       460        

29 EM_PRO:DQ847419
Mycoplasma gateae strain V-1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
822 896 89.7 89.7 4.7E-12
>>EM_PRO:DQ847419 DQ847419.1 Mycoplasma gateae strain V-1 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (822 nt)
rev-comp initn: 777 init1: 524 opt: 896  Z-score: 395.7  bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
             310       320       330       340       350       360 

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::  ::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
             370       380       390       400       410       420 

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
             430       440       450       460       470        480

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
              490       500       510       520       530       540

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
              550       560       570       580       590       600

30 EM_PRO:DQ847420
Mycoplasma gateae strain KDC 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
822 896 89.7 89.7 4.7E-12
>>EM_PRO:DQ847420 DQ847420.1 Mycoplasma gateae strain KDC 16S
ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (822 nt)
rev-comp initn: 777 init1: 524 opt: 896  Z-score: 395.7  bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
             310       320       330       340       350       360 

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::  ::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
             370       380       390       400       410       420 

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
             430       440       450       460       470        480

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
              490       500       510       520       530       540

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
              550       560       570       580       590       600

31 EM_PRO:AY736029
Mycoplasma equirhinis strain ATCC 29420 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
821 896 89.7 89.7 4.7E-12
>>EM_PRO:AY736029 AY736029.1 Mycoplasma equirhinis strain ATCC
29420 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (821 nt)
rev-comp initn: 824 init1: 580 opt: 896  Z-score: 395.7  bits: 82.4 E(132426985): 4.7e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:333-554)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AGGTCATACAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            310       320       330       340       350       360  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            370       380       390       400       410       420  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::  :  ::::::::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAACCCTCAATTGTCAT-ATCGATG
            430       440       450       460       470        480 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             490       500       510       520       530       540 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             550       560       570       580       590       600 

32 EM_PRO:AY973561
Mycoplasma gateae strain ATCC 23392 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
820 896 89.7 89.7 4.8E-12
>>EM_PRO:AY973561 AY973561.1 Mycoplasma gateae strain ATCC
23392 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (820 nt)
rev-comp initn: 777 init1: 524 opt: 896  Z-score: 395.7  bits: 82.4 E(132426985): 4.8e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:333-554)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO GATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            310       320       330       340       350       360  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::  ::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
            370       380       390       400       410       420  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
            430       440       450       460       470        480 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
             490       500       510       520       530       540 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
             550       560       570       580       590       600 

33 EM_PRO:AY973562
Mycoplasma gateae strain ATCC 23392 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
819 896 89.7 89.7 4.8E-12
>>EM_PRO:AY973562 AY973562.1 Mycoplasma gateae strain ATCC
23392 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (819 nt)
rev-comp initn: 777 init1: 524 opt: 896  Z-score: 395.7  bits: 82.4 E(132426985): 4.8e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:332-553)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
             310       320       330       340       350       360 

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::  ::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTTA
             370       380       390       400       410       420 

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
             430       440       450       460       470        480

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
              490       500       510       520       530       540

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAAC
              550       560       570       580       590       600

34 EM_EST:DA466599
Homo sapiens cDNA clone D3OST2004792, 5' end, mRNA sequence.
Cross-references and related information in:
563 896 89.7 89.7 5.2E-12
>>EM_EST:DA466599 DA466599.1 Homo sapiens cDNA clone
D3OST2004792, 5' end, mRNA sequence. (563 nt)
rev-comp initn: 786 init1: 533 opt: 896  Z-score: 397.9  bits: 82.3 E(132426985): 5.2e-12
banded Smith-Waterman score: 896; 89.7% identity (89.7% similar) in 223 nt overlap (236-14:3-224)

    250       240       230       220       210       200          
AF241- ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
                    :::::::::::::::::::::::::::::::::::::::::::::::
EM_EST            ATAAGAGTTTTTGGTGGATGCCTTGGGTCTGGAAGTCGATGAAGGACGT
                          10        20        30        40         

    190       180       170       160       150       140          
AF241- GATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTAGACGGAGATTTCCGAAT
       ::::::::::::::::: ::: ::::::::::::::::  : :  ::: :::::::::::
EM_EST GATTACCTGCGATAAGCCTCGGTTAGCTGGAAATGAGCTGTGATCCGGGGATTTCCGAAT
      50        60        70        80        90       100         

    130       120       110       100        90        80          
AF241- GGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTGAATCCATAGCCGAATGA
       ::::::::::::::  : :::: :  :::: :::: : :: ::::: ::::: :::::::
EM_EST GGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ACCGATGAATACATAGTCGAATGA
     110       120       130       140        150       160        

     70        60        50        40        30        20          
AF241- TGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAAAAAAAAAAAAA
        :::::::::::::::::::::::::::::::::::::::::::::::: ::: ::    
EM_EST AGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAGAGAAAATAAAGAATGAT
      170       180       190       200       210       220        

     10                                                            
AF241- AAAAAAAAA                                                   
                                                                   
EM_EST TCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCCAAACCAACATTCGTTGTTGGGGTTG
      230       240       250       260       270       280        

35 EM_PRO:DQ840513
Mycoplasma phocicerebrale strain CSL 5195S2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2207 887 89.2 89.2 6.1E-12
>>EM_PRO:DQ840513 DQ840513.1 Mycoplasma phocicerebrale strain
CSL 5195S2 16S ribosomal RNA gene, partial sequence;
16S-23S ribosomal RNA intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence. (2207 nt)
rev-comp initn: 768 init1: 515 opt: 887  Z-score: 386.1  bits: 82.1 E(132426985): 6.1e-12
banded Smith-Waterman score: 887; 89.2% identity (89.2% similar) in 223 nt overlap (236-14:1717-1938)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAATATAAATTTAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
       1690      1700      1710      1720      1730      1740      

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: ::::::::::::  ::  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATATGCTGTGA
       1750      1760      1770      1780      1790      1800      

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGTTAATCCTCAATTATCAT-ATCGATG
       1810      1820      1830      1840      1850       1860     

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::: ::::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATTCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
        1870      1880      1890      1900      1910      1920     

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
        1930      1940      1950      1960      1970      1980     

36 EM_PRO:AY772217
Mycoplasma auris 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
829 887 89.2 89.2 7.6E-12
>>EM_PRO:AY772217 AY772217.1 Mycoplasma auris 16S ribosomal
RNA gene, partial sequence; 16S-23S ribosomal RNA
intergenic spacer, complete sequence; and 23S ribosomal RNA
gene, partial sequence. (829 nt)
rev-comp initn: 819 init1: 533 opt: 887  Z-score: 391.9  bits: 81.8 E(132426985): 7.6e-12
banded Smith-Waterman score: 887; 89.2% identity (89.2% similar) in 223 nt overlap (236-14:339-560)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
      310       320       330       340       350       360        

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
      370       380       390       400       410       420        

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : : :: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTCATACTCAATTATCAT-ATCGATG
      430       440       450       460       470       480        

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       :::: :::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
       490       500       510       520       530       540       

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGACATAGCCCAAACCAA
       550       560       570       580       590       600       

37 EM_PRO:AY780803
Mycoplasma subdolum strain ATCC 29870 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
823 881 88.3 88.3 1.0E-11
>>EM_PRO:AY780803 AY780803.1 Mycoplasma subdolum strain ATCC
29870 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (823 nt)
rev-comp initn: 864 init1: 864 opt: 881  Z-score: 389.5  bits: 81.3 E(132426985): 1e-11
banded Smith-Waterman score: 881; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:334-556)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CATACAAAAATAATAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
           310       320       330       340       350       360   

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::::: :::::::::::::::::::::::::: ::::::::: ::::::  :::  ::
EM_PRO AAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCCGGAAATAGGCAACTA
           370       380       390       400       410       420   

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
       ::::: ::::::::::::::::::::::::   : :::: :   :::: :::: :: :::
EM_PRO GACGGGGATTTCCGAATGGGGAAACCTAATGGAGCTAATCCTCCATTGCCATAGTCAGTG
           430       440       450       460       470       480   

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       :::::::::: :::::  :::::::: ::::::::::::::::::::::::: :::::::
EM_PRO AATCCATAGCTGAATGGCGAGACACGATGTGAATTGAAACATCTCAGTAGCATCAGGAAG
           490       500       510       520       530       540   

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTCAGTAGTGGCGAGCGAACGGGGAAGAGCCTAAACCAGC
           550       560       570       580       590       600   

38 EM_PRO:DQ847417
Mycoplasma canadense strain 275C 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
825 878 88.8 88.8 1.2E-11
>>EM_PRO:DQ847417 DQ847417.1 Mycoplasma canadense strain 275C
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (825 nt)
rev-comp initn: 768 init1: 515 opt: 878  Z-score: 388.2  bits: 81.1 E(132426985): 1.2e-11
banded Smith-Waterman score: 878; 88.8% identity (88.8% similar) in 223 nt overlap (236-14:335-556)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
          310       320       330       340       350       360    

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::: ::::::::: :  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATGAACTGTGA
          370       380       390       400       410       420    

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
          430       440       450       460       470        480   

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       :::  :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
           490       500       510       520       530       540   

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
           550       560       570       580       590       600   

39 EM_PRO:AY800341
Mycoplasma canadense strain ATCC 29418 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
821 878 88.8 88.8 1.2E-11
>>EM_PRO:AY800341 AY800341.1 Mycoplasma canadense strain ATCC
29418 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (821 nt)
rev-comp initn: 768 init1: 515 opt: 878  Z-score: 388.3  bits: 81.1 E(132426985): 1.2e-11
banded Smith-Waterman score: 878; 88.8% identity (88.8% similar) in 223 nt overlap (236-14:334-555)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
           310       320       330       340       350       360   

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::: ::::::::: :  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATGAACTGTGA
           370       380       390       400       410       420   

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
           430       440       450       460       470        480  

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       :::  :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
            490       500       510       520       530       540  

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
            550       560       570       580       590       600  

40 EM_PRO:EU925158
Mycoplasma canadense strain 466 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2163 872 87.9 88.8 1.3E-11
>>EM_PRO:EU925158 EU925158.1 Mycoplasma canadense strain 466
16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal
RNA intergenic spacer, complete sequence; and 23S ribosomal
RNA gene, partial sequence. (2163 nt)
rev-comp initn: 762 init1: 509 opt: 872  Z-score: 380.0  bits: 80.9 E(132426985): 1.3e-11
banded Smith-Waterman score: 872; 87.9% identity (88.8% similar) in 223 nt overlap (236-14:1686-1907)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::.:::::::::::::::
EM_PRO AATAGGTCTTATACTACTATTAAACAAGATAAGAGTTTTTGGTGRATGCCTTGGGTCTGG
        1660      1670      1680      1690      1700      1710     

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       :::::::::::::::::::::::::::::::::: ::: :::: :::::::.: :  : :
EM_PRO AAGTCGATGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGTTGGAAATRAACTGTGA
        1720      1730      1740      1750      1760      1770     

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::::::::  : :::: :  :::: :::: :::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-ATCGATG
        1780      1790      1800      1810      1820       1830    

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       :::  :::: ::::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATAAATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
         1840      1850      1860      1870      1880      1890    

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTAAGTAGTGGCGAGCGAAAGGGGAAAAGCCCAAACCAAC
         1900      1910      1920      1930      1940      1950    

41 EM_PRO:GU905028
Mycoplasma phocidae strain C264-NAS 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
2208 869 88.3 88.3 1.6E-11
>>EM_PRO:GU905028 GU905028.1 Mycoplasma phocidae strain
C264-NAS 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (2208 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 378.7  bits: 80.7 E(132426985): 1.6e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:1706-1927)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
        1680      1690      1700      1710      1720      1730     

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
        1740      1750      1760      1770      1780      1790     

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
        1800      1810      1820      1830      1840       1850    

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
         1860      1870      1880      1890      1900      1910    

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
         1920      1930      1940      1950      1960      1970    

42 EM_PRO:AY796064
Mycoplasma buccale strain ATCC 23636 16S ribosomal RNA gene, 16S-23S ribosomal RNA intergenic spacer, and 23S ribosomal RNA gene, complete sequence.
Cross-references and related information in:
864 869 88.3 88.3 2.0E-11
>>EM_PRO:AY796064 AY796064.1 Mycoplasma buccale strain ATCC
23636 16S ribosomal RNA gene, 16S-23S ribosomal RNA
intergenic spacer, and 23S ribosomal RNA gene, complete
sequence. (864 nt)
rev-comp initn: 810 init1: 515 opt: 869  Z-score: 384.3  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:376-597)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     :::::::::::::::::::::::::::: :
EM_PRO CAATAACTGACAAATACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTAG
         350       360       370       380       390       400     

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
        :::::: :::::::::::::::::::::::::: :::::::::::::::: ::::   :
EM_PRO TAGTCGAAGAAGGACGTGATTACCTGCGATAAGCCTCGTTTAGCTGGAAATAAGCAACGA
         410       420       430       440       450       460     

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
        :::: :::::::::::::::::::::::::  : :::: :  :::: ::::  : : ::
EM_PRO TACGGGGATTTCCGAATGGGGAAACCTAATTGAGCTAATCCTCAATTATCAT-TTTGATG
         470       480       490       500       510        520    

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: : ::::: ::::::::::::::::::::::::::::::::::::::::::
EM_PRO AATCCATAGTCAAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
          530       540       550       560       570       580    

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACTAGC
          590       600       610       620       630       640    

43 EM_PRO:DQ840484
Mycoplasma phocidae strain CSL 4801 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
844 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840484 DQ840484.1 Mycoplasma phocidae strain CSL
4801 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.4  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            330       340       350       360       370       380  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            390       400       410       420       430       440  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
            450       460       470       480       490        500 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             510       520       530       540       550       560 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             570       580       590       600       610       620 

44 EM_PRO:DQ840486
Mycoplasma phocidae strain CSL 4949 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
844 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840486 DQ840486.1 Mycoplasma phocidae strain CSL
4949 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.4  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            330       340       350       360       370       380  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            390       400       410       420       430       440  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
            450       460       470       480       490        500 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             510       520       530       540       550       560 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             570       580       590       600       610       620 

45 EM_PRO:DQ840487
Mycoplasma phocidae strain CSL 4957 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
844 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840487 DQ840487.1 Mycoplasma phocidae strain CSL
4957 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.4  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            330       340       350       360       370       380  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            390       400       410       420       430       440  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
            450       460       470       480       490        500 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             510       520       530       540       550       560 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACAGGGAAAAGCCCAAACCAAC
             570       580       590       600       610       620 

46 EM_PRO:DQ840485
Mycoplasma phocidae strain CSL 4945 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
844 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840485 DQ840485.1 Mycoplasma phocidae strain CSL
4945 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.4  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            330       340       350       360       370       380  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            390       400       410       420       430       440  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
            450       460       470       480       490        500 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             510       520       530       540       550       560 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             570       580       590       600       610       620 

47 EM_PRO:DQ840488
Mycoplasma phocidae strain CSL 5364 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
844 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840488 DQ840488.1 Mycoplasma phocidae strain CSL
5364 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (844 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.4  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:353-574)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO CAAAATAACAAAACAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
            330       340       350       360       370       380  

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
            390       400       410       420       430       440  

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGCTAATCCTCAATTATCAT-TTCGATG
            450       460       470       480       490        500 

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
             510       520       530       540       550       560 

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
             570       580       590       600       610       620 

48 EM_PRO:DQ840492
Mycoplasma phocidae strain CSL 5263 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
833 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840492 DQ840492.1 Mycoplasma phocidae strain CSL
5263 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (833 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.5  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:342-563)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO TACATAAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
             320       330       340       350       360       370 

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
             380       390       400       410       420       430 

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
             440       450       460       470       480        490

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
              500       510       520       530       540       550

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
              560       570       580       590       600       610

49 EM_PRO:DQ840491
Mycoplasma phocidae strain CSL 5410 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
832 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840491 DQ840491.1 Mycoplasma phocidae strain CSL
5410 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (832 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.5  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:341-562)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATACATAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
              320       330       340       350       360       370

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
              380       390       400       410       420       430

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
              440       450       460       470       480          

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
     490       500       510       520       530       540         

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
     550       560       570       580       590       600         

50 EM_PRO:DQ840490
Mycoplasma phocidae strain CSL 4693 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.
Cross-references and related information in:
832 869 88.3 88.3 2.0E-11
>>EM_PRO:DQ840490 DQ840490.1 Mycoplasma phocidae strain CSL
4693 16S ribosomal RNA gene, partial sequence; 16S-23S
ribosomal RNA intergenic spacer, complete sequence; and 23S
ribosomal RNA gene, partial sequence. (832 nt)
rev-comp initn: 785 init1: 490 opt: 869  Z-score: 384.5  bits: 80.4 E(132426985): 2e-11
banded Smith-Waterman score: 869; 88.3% identity (88.3% similar) in 223 nt overlap (236-14:341-562)

                     250       240       230       220       210   
AF241-                  ACGCGGGATAAGCAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
                                     ::::::::::::::::::::::::::::::
EM_PRO ATACATAATAATAAAACTATTAAACAAGATAAGAGTTTTTGGTGGATGCCTTGGGTCTGG
              320       330       340       350       360       370

           200       190       180       170       160       150   
AF241- AAGTCGATGAAGGACGTGATTACCTGCGATAAGCTTCGTTTAGCTGGAAATGAGCATTTA
       ::::: : :::::::::::::::::::::::::: ::: :::::::::::: :::  :::
EM_PRO AAGTCTAAGAAGGACGTGATTACCTGCGATAAGCCTCGGTTAGCTGGAAATAAGCTGTTA
              380       390       400       410       420       430

           140       130       120       110       100        90   
AF241- GACGGAGATTTCCGAATGGGGAAACCTAATTAGGGTAATGCCTAATTGTCATAATCGGTG
         ::: :::::::::::::::::::: ::::  : :::: :  :::: ::::  ::: ::
EM_PRO TCCGGGGATTTCCGAATGGGGAAACCCAATTGAGTTAATCCTCAATTATCAT-TTCGATG
              440       450       460       470       480          

            80        70        60        50        40        30   
AF241- AATCCATAGCCGAATGATGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAG
       ::::::::: ::::::: ::::::::::::::::::::::::::::::::::::::::: 
EM_PRO AATCCATAGTCGAATGAAGAGACACGCTGTGAATTGAAACATCTCAGTAGCAGCAGGAAA
     490       500       510       520       530       540         

            20        10                                           
AF241- AGAAAAAAAAAAAAAAAAAAAAAAAA                                  
       :::::: ::: ::                                               
EM_PRO AGAAAATAAAGAATGATTCCCTTAGTAGTGGCGAGCGAACGGGGAAAAGCCCAAACCAAC
     550       560       570       580       590       600