Aligning Protein Structures with GR-Align (GRaphlet-based Aligner)
Noel Malod-Dognin and Natasa Przulj
Corresponding author: Dr. N. Malod-Dognin, e-mail: n.malod-dognin [AT] cs.ucl.ac.uk
GR-Align is a fast heuristic procedure for aligning/comparing protein
structures according to the Contact Map Opverlap maximization (CMO)
The algorithm is based on a Needleman-Wunch algorithm where the cost for
matching two residues is their graphlet degree similarity.
Update. Outputs of the original software were hard to parse. In version 1.5, aligned residues are now labelled with their pdb-ids.