Mycoplasma Contamination in The 1000 Genomes Project

Examples of Contaminated Scans

n1 contaminated scans in n2 downloaded. Lab l1
- n1 contaminated scans of type t1
  - start date--end date list of ids

63 5786 WUGSC
- 17 pair,ordinary
  - 2008-08-14--2010-11-01 SRR002837 SRR002877 SRR002887 SRR003151 SRR003160 SRR004001 SRR004006 SRR004052 SRR004053 SRR004057 SRR004084 SRR004324 SRR004483 SRR004807 SRR007419 SRR071074 SRR071094
- 46 single,ordinary
  - 2009-05-04--2009-05-10 SRR015403 SRR015899
  - 2008-08-13--2008-08-28 SRR002844 SRR003017 SRR003980
  - 2008-08-15--2010-11-01 SRR002937 SRR003061 SRR003409 SRR003550 SRR003832 SRR003893 SRR003908 SRR004180 SRR004228 SRR004584 SRR004616 SRR004620 SRR004654 SRR004660 SRR004663 SRR004685 SRR004703 SRR004742 SRR005020 SRR005057 SRR005223 SRR005237 SRR005270 SRR005315 SRR005580 SRR005584 SRR005836 SRR005840 SRR005902 SRR005973 SRR005977 SRR006069 SRR006774 SRR070732 SRR070951 SRR070961 SRR070977 SRR070992 SRR071001 SRR071013 SRR071027
93 9801 BCM
- 41 single,colorspace
  - 2011-03-16--2011-03-16 SRR125758
  - 2011-02-08--2011-03-16 SRR098930 SRR098933 SRR125747
  - 2011-02-03--2011-02-16 SRR097673 SRR097800 SRR101877 SRR102397
  - 2011-03-16--2011-03-16 SRR125740 SRR125741 SRR125742
  - 2011-02-08--2011-02-08 SRR098935 SRR098937
  - 2011-01-27--2011-01-27 SRR096678
  - 2009-01-02--2009-01-02 SRR010345 SRR010350 SRR010443 SRR010472 SRR010486 SRR010505 SRR010625 SRR010631 SRR010643 SRR010678 SRR010679 SRR010747 SRR010752
  - 2011-02-04--2011-02-16 SRR097945 SRR098940 SRR103679
  - 2011-01-27--2011-02-17 SRR096724 SRR107060
  - 2011-02-04--2011-04-06 SRR097747 SRR097941 SRR098924 SRR098952 SRR107004 SRR111886 SRR172681 SRR172819 SRR172826
- 52 pair,colorspace
  - 2011-12-08--2012-01-10 SRR388287 SRR397816
  - 2011-12-02--2011-12-02 SRR387410 SRR387415
  - 2008-08-22--2009-01-02 SRR007229 SRR007230 SRR007234 SRR007237 SRR007238 SRR007240 SRR007241 SRR007247 SRR007264 SRR007267 SRR007271 SRR007275 SRR007285 SRR010025 SRR010143 SRR010212 SRR010247 SRR010254 SRR010258 SRR010278 SRR010279 SRR010287 SRR010303 SRR010314 SRR010550 SRR010595 SRR010605 SRR010817
  - 2010-03-26--2011-06-29 SRR038692 SRR040441 SRR303347
  - 2011-11-01--2011-11-01 SRR377618
  - 2010-02-04--2010-04-22 SRR035259 SRR035261 SRR040176
  - 2011-01-27--2011-01-27 SRR096570 SRR096614
  - 2010-08-23--2010-08-23 SRR064352
  - 2010-05-05--2010-06-08 SRR042441 SRR057358
  - 2011-04-03--2011-04-03 SRR171235
  - 2011-01-27--2011-01-27 SRR096626
  - 2011-12-05--2011-12-05 SRR387571
  - 2010-10-26--2011-12-02 SRR070253 SRR387424
  - 2011-12-02--2012-01-10 SRR387416 SRR397819
  - 2011-01-27--2011-01-27 SRR096556
13 1411 MPIMG
- 10 pair,ordinary
  - 2009-09-04--2009-10-06 ERR005830 ERR006227 ERR006242 ERR006366 ERR006402
  - 2008-09-17--2008-09-17 ERR001302
  - 2008-10-14--2008-10-24 ERR001601 ERR001614 ERR001619
  - 2009-10-06--2009-10-06 ERR006302
- 3 pair,colorspace
  - 2010-06-04--2010-06-04 ERR019666
  - 2010-06-04--2010-06-04 ERR019659
  - 2010-11-03--2010-11-03 ERR022064
22 6222 BGI
- 12 single,ordinary
  - 2009-12-21--2009-12-21 ERR008832 ERR008844 ERR008926 ERR008935 ERR008940 ERR008946 ERR009050
  - 2008-08-14--2008-12-15 ERR000022 ERR001973 ERR001978 ERR002003 ERR002034
- 6 pair,ordinary
  - 2008-08-14--2009-12-21 ERR000093 ERR000333 ERR005158 ERR005160 ERR008868 ERR008980
- 4 pair,colorspace
  - 2010-09-26--2010-09-26 ERR020150
  - 2011-07-21--2011-07-21 ERR039657 ERR039670
  - 2009-12-22--2009-12-22 ERR012632
53 16377 SC
- 53 pair,ordinary
  - 2009-05-07--2010-06-01 ERR003282 ERR003359 ERR003376 ERR003420 ERR003446 ERR003501 ERR003523 ERR003557 ERR003628 ERR003629 ERR003796 ERR003797 ERR003805 ERR003884 ERR003904 ERR012551
  - 2010-02-25--2010-02-25 ERR009191
  - 2008-08-12--2009-05-06 ERR000794 ERR000813 ERR000846 ERR001036 ERR001056 ERR001355 ERR001376 ERR001406 ERR001483 ERR001490 ERR001507 ERR001547 ERR001631 ERR001684 ERR002141 ERR002159 ERR002193 ERR002311 ERR002347 ERR002459 ERR003124
  - 2008-12-15--2008-12-15 ERR001747 ERR001837 ERR001847 ERR001895 ERR001903 ERR002374
  - 2009-03-12--2009-07-16 ERR002991 ERR003014 ERR004030 ERR004039 ERR004060 ERR004069 ERR005149
  - 2010-06-07--2010-11-12 ERR013159 ERR022473
4 2283 ABI
- 4 pair,colorspace
  - 2008-10-23--2008-10-23 SRR011389 SRR012593 SRR012727 SRR012729
21 90097 BI
- 1 pair,ordinary
  - 2008-04-08--2008-04-08 SRR001807
- 20 single,ordinary
  - 2008-03-25--2008-08-26 SRR003382 SRR014189 SRR014192 SRR014195
  - 2009-05-08--2009-05-08 SRR015534 SRR015538
  - 2009-11-18--2009-11-18 SRR031308
  - 2008-04-08--2009-01-06 SRR001113 SRR001141 SRR001143 SRR001173 SRR001190 SRR001748 SRR002131 SRR002170 SRR002200 SRR002202 SRR003094 SRR003096 SRR014600

total 1944
tot 269

W.B.Langdon
29 Apr 2014