Scratch version (Dated Oct 28 14:36, 2011) of 
script to build bowtie2 database from NCBI human genome release 37 patch 5

See also

No Raspberry PI Bowtie2

The Bowtie2 Makefile contains SSE_FLAG=-msse2. It appears the RPI, which has an ARM processor CPU, which does not have SSE instructions. However Ben Langmead says: there's no way to compile Bowtie 2 without SSE support.

W.B.Langdon 28 Oct 2011 (Converted to HTML and updated 20 Aug 2012)

Original non-HTML file.