W.Langdon 28 Oct 2021 W. B. Langdon and B. F. Buxton. Genetic Programming for Mining DNA Chip data from Cancer Patients. GP+EM Pomeroy_et_al_0G04850_11142001_datasets/ GPinc.tar.gz fastest single computer GP EuroGP 2021 GPavx.tar.gz fastest single computer GP RN/19/01 gi_cbrt.tar.gz Code for genetic improvment via data for various GNU C library support routines cbrt, log, 1/x, x**(-0.5) efficient_memory/ demo of Koza's alg to use only 2 extra buffers for generational GA cf SIGEVOLution, 2020 13(4) p2-4 doi:10.1145/3430913.3430914 exact_marp0.awk for "Exact Mean Absolute Error of Baseline Predictor, MARP0", WB Langdon, et al., Information and Software Technology Genetic Improvement system to evolve better pknotsRG: pknotsGI.tar.gz Genetic Improvement system for better BarraCUDA: barracuda_gp.tar.gz Training data for BarraCUDA: see directory barracuda_0.7.105/ Current release http://sourceforge.net/projects/seqbarracuda/ Genetic Improvement system to evolve better NiftyReg niftycuda.tar.gz Improved code for NiftyReg nifty_reg-1.3.9_patch.tar.gz GI system to evolve better StereoCamera: StereoCamera_1_1.tar.gz Training images: StereoImages.tar.gz Geneticaly Improved StereoCamera: StereoCamera_v1_1c.zip Genetic Improvement of Bowtie2: see directory bowtie2gp BNF grammar and training examples for CUDA gzip code langdon_2010_cigpu.tar.gz Sub machine code GP running under CUDA for nVidia GPU/Tesla gp32cuda.tar.gz (v1.1) Nuclear Protien localisation test dataset wbl_gecco2004lb_protein.tar.gz GPU Genetic programming C++ code gpu_gp_2.tar.gz gp32cuda.tar.gz random-numbers/gpu_park-miller.tar.gz random-numbers/cuda_park-miller.tar.gz Genetic programming C++ code Genetic programming C++ code to evolve data structures GPdata-3.0.tar.gz contains a version of Andy Singleton's GP-Quick version 2.1 which has been extensively altered to support: Indexed memory operation (cf. teller) multi tree programs Adfs parameter changes without recompilation populations partitioned into demes (A version of) pareto fitness Like GP-Quick, this software is free for non commercial use and is unsupported. Usage: ----- Some documentation included. See also ftp::/cs.ucl.ac.uk/genetic/papers/GPdata-icga-95.ps GPdata-3.0.test.tar.gz contains sample output Major changes since GPdata-20-aug-95.tar.Z ----------------------------------------- GPdata-3.0.tar.gz superceeds previous versions. Now includes support for ant Original ant problem, and upgrade used in bloat paper in WSC2 stack Evolve a stack data structure ICGA-95 queue Evolve a queue data structure ICGA-95 list Evolve a list data structure AiGP2 brack Evolve nested bracket language recogniser GP-96 karp Evolve dyck language recogniser GP-96 rpn Evolve Reverse Polish Notation calculator GP-96 max Studies of MAX problem (largest possible value tree) GP-97 Major changes since GPdata-1-dec-94.tar.Z (from work on list problem) ----------------------------------------- New Primitives forewhile and other loops, print, swap, FUNC more flexibity on different memory index errors Pareto Elitism and Niching Directed crossover (at tree level) CPU usage as part of fitness function Code speedups Reusing fitness information by offspring Aux1_caching Reduce memory required by population Support for Separate test script, including multiple test phases. (gzipped) checkpoint file. gcc version 2.6.3 Improved error checking on loading an individual Better display of population statistics frequency of primitive usage. Add monitoring lost primitives and problem dependent combinations of primitives. some offline gnuplot support. GPdata_gp96.test.tar.Z (replaced by grammar_test_ilp.tar.gz) ---------------------- Contains three sets of test cases for the problems described in WBL.gp96.ps The problems are recognising balanced brackets, balanced brackets of different types and evaluation reverse polish integer expressions. See Chapter 7 "Genetic Programming and Data Structures". randspace.tar.gz randspace.zip ------------------------------ C++ code for random tree fitness decribed in PPSN'2000 paper "Genetic Programming Bloat without Semantics" GProc-1.1.tar.gz to GProc-1.8.tar.gz ---------------- ---------------- C++ code for using GP to combine existing classifiers. Uses reciever operating characteristics of composite classifier to guide evolutionary search. Contains SUN and WindowsNT executables. Technique described in (for example) "Genetic Programming for Combining Neural Networks for Drug Discovery", W. B. Langdon and S. J. Barrett and B. F. Buxton, Soft Computing and Industry Recent Applications, 597-608, Springer Verlag. Published 2002. genetic/papers/WBL_wsc6.pdf dgpc.tar.gz c2003dgpcdave.pdf ----------- ----------------- Dave's [Andre] Genetic Programming Code, C Copied (8 August 2004) from http://www.genetic-programming.com/dgpc.tar.gz tiny_gp/ Riccardo Poli's Tiny GP in C polygp.tar.gz copy of https://github.com/yangsiwei880813/PolyGP via George Gerules